AMBER Archive (2009)

Subject: Re: [AMBER] adding chain id to ptraj pdb output

From: Bala subramanian (bala.biophysics_at_gmail.com)
Date: Mon Mar 23 2009 - 06:37:43 CDT


Hi,
I am sure if ptraj can do this but this can be done easily with biopython
that has a module to parse pdb files and manipulate text informations.

Bala

On Sun, Mar 22, 2009 at 3:09 AM, Paul Brandt <brandt.j_at_gene.com> wrote:

> Dear amber users,
>
>
>
> I need to add chain IDs and renumber the pdb file output from ptraj. I
> need
> to do this for hundreds of files. I'm pretty sure the ptraj can't do this,
> but would love to find out that I'm wrong.
>
>
>
> If ptraj can't: Does anyone know of a program can do this for a batch of
> ptraj pdb output files.
>
>
>
> Thanks,
>
>
>
> Paul
>
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