AMBER Archive (2009)
Subject: [AMBER] Help needed in amber parallel installation
Date: Fri Mar 20 2009 - 01:39:36 CDT
I have installed amber serial version in our cluster system which is working fine. For the next step I wanted to install the parallel version of amber in the same cluster system. But after installation is completed, when i am trying to test the installed programs then it is giving me some error and the test is failing. Let me first give the steps that i had taken for the installation
./configure_amber -mpich2 ifort
set DO_PARALLEL 'mpirun -np 8'
make test.parallel.MM < /dev/null
after the last step i am getting a failed test with the following error.
MKL func load error: /opt/intel/mkl/10.0.1.014/lib/em64t/libmkl_vml_mc2.so: undefined symbol: vmlGetErrorCallBack
./Run.circdna: Program error
make: *** [test.sander.GB] Error 1
make: Leaving directory `/opt/Bio/amber10/test'
make: *** [test.sander.GB.MPI] Error 2
can any one please help me out with this
Mr. Sushobhan Bandyopadhyay
Junior Research Fellow
Bioinformatics & Structural Biology
Indian Institute of Advanced Research
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