AMBER Archive (2009)

Subject: [AMBER] suggestions for PB simulation

From: Bala subramanian (
Date: Sat Mar 14 2009 - 11:41:19 CDT

Hello all,

I want to perform PB dynamics on a DNA molecule. Kindly suggest some
reference for the same ( PB dynamics of DNA done with Amber8 or 9.)

Any suggestions on the precautions that has to be taken care of while
simulating DNA with PB would be helpful as i am trying it for the first

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