AMBER Archive (2009)

Subject: Re: [AMBER] Pseudoatoms

From: David A. Case (
Date: Mon Mar 02 2009 - 17:25:29 CST

On Mon, Mar 02, 2009, waleed zalloum wrote:
> How can I add NMR pseudoatoms to a protein or DNA structure to use it in SANDER.

Many common pseudoatoms are already known to makeDIST_RST-- see section
6.7 of the Users' Manual. If you need to define new ones, you can see
the same section, or use the igr1,igr2 flags in the &rst namelist.

...good luck...dac

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