AMBER Archive (2009)

Subject: RE: [AMBER] problem with amber installation

From: Ross Walker (
Date: Wed Feb 25 2009 - 09:05:26 CST

Hi Nicholus

> I have copied leaprc.ff99SB as leaprc in my working
> directory. the tleap is working fine. but i can not use the solvateBox mol
> WATBOX216 10. its showing massage as bellow
> solvateBox: Argument #2 is type String must be of type: [unit]
> usage: solvateBox <solute> <solvent> <buffer> [iso] [closeness]

WATBOX216 does not exist in AMBER 9 anymore. It is now called TIP3PBOX so
use that instead:

solvatebox mol TIP3PBOX 10.0
> what else do i have to copy to my working directory. the tutorial provided
> with the amber9 cd does not tell everything in details. please help. thanx
> in advance.

I suggest using the tutorials on These are
updated more frequently.

All the best

|\oss Walker

| Assistant Research Professor |
| San Diego Supercomputer Center |
| Tel: +1 858 822 0854 | EMail:- |
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