AMBER Archive (2009)

Subject: Re: [AMBER] ./configure_amber: line 1211: cd: netcdf/src: No such file or directory

From: David A. Case (case_at_biomaps.rutgers.edu)
Date: Wed Feb 18 2009 - 12:11:56 CST

On Wed, Feb 18, 2009, Andrew Olson wrote:

> I am trying to install amber10 on a mac and am running into a bit of
> trouble. I successfully install ambertools and the bigfixes for both
> ambertools and amber10. However when i configure amber10 with gfortran
> i encounter this message.
>
> ./configure_amber gfortran
> Setting AMBERHOME to /Applications/Amber10/amber10
>
> Setting up Amber configuration file for architecture: gfortran
> Using parallel communications library: none
> Using Apple Accelerate Framework for g95.
>
> Testing the C compiler:
> gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -m32 -o testp testp.c
> OK
>
> Testing the Fortran compiler:
> gfortran -O0 -fno-range-check -fno-second-underscore -o testp testp.f
> OK
>
> ------ Configuring the netCDF libraries: --------
>
> Configuring netcdf; (may be time-consuming)
> ./configure_amber: line 1211: cd: netcdf/src: No such file or directory

Weird. Can you see if there is indeed a netcdf/src directory underneath
$AMBERHOME/src? If not, you may have to re-install AmberTools.

> netcdf configure returned 1
> NETCDF configure failed! Check the netcdf_config.log file
>
>
> So i check the log file however i have no clue what its saying. Here it is,

What you are seeing in the log file is probably the (successful) netcdf
configuration you got when setting up AmberTools. It won't help you
any, since the configure_amber failed immediately with the "cd" command
discussed above.

Maybe the Mac people on the list will recognize this one.

...dac

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