AMBER Archive (2009)

Subject: [AMBER] New atom type with 7 bonds

From: Akansha Saxena (
Date: Fri Feb 13 2009 - 17:56:47 CST

Dear amber users,

I am building a new molecule in my simulations with 2 new atom types: XZ and DX.
The molecule consists of 1XZ and 7 DXs i.e. 8 atoms where XZ is bonded to the remaining 7 atoms.
When I build the molecule in XLEAP and draw bonds between the atoms, the software does not let me connect XZ to anything more than 6.
Is there a limit in XLEAP on the number of bonds I define for an atom?

If yes, then is it possible to increase that limit. Kindly let me know how.

Thanking you in advance.



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