AMBER Archive (2009)

Subject: Re: [AMBER] Dr. Ramesh here

From: kureeckal ramesh (
Date: Thu Jan 29 2009 - 21:18:33 CST

Dear Raviprasad,

I am pasting the error message what i got while ruuning antechamber using sustiva.pdb. Awaiting your suggestions,
[root_at_node5 exe]# ./antechamber -i sustiva.pdb -fi pdb -o sustiva.prepin -fo prepi -c bcc -s 2
Running: /usr/local/amber10/amber10/bin/bondtype -j full -i ANTECHAMBER_BOND_TYPE.AC0 -o ANTECHAMBER_BOND_TYPE.AC -f ac

Running: /usr/local/amber10/amber10/bin/atomtype -i ANTECHAMBER_AC.AC0 -o ANTECHAMBER_AC.AC -p gaff

Total number of electrons: 160; net charge: 0

Running: /usr/local/amber10/amber10/bin/
/usr/local/amber10/amber10/bin/ line 12: /usr/local/amber10/amber10/bin/mopac: is a directory
mv: cannot stat `FOR006': No such file or directory
Cannot open mopac output file: mopac.out in rmopacharge(), exit


with best of regards
ramesh k v

--- On Thu, 29/1/09, <> wrote:
From: <>
Subject: Re: [AMBER] Dr. Ramesh here
To:, "AMBER Mailing List" <>
Date: Thursday, 29 January, 2009, 10:52 PM

Dear Ramesh,
I am afraid to say that the attachment didn't work. Why don't you just
paste the
error message to your e-mail text.
Raviprasad Aduri

Quoting kureeckal ramesh <>:

> Hi
> I am a new user to AMBER10. While working with sustiva.pdb (AMBER
> using ANTECHAMBER program (LINUX), I got an error ( sent as an
> I request any one of you  who can address this problem and guide me in
> solving this.
> With best of regards
> RAmesh K V
> Connect with friends all over the world. Get Yahoo! India Messenger
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