AMBER Archive (2009)

Subject: [AMBER] generating top file using antechmaber

From: sarvin moghaddam (
Date: Wed Jan 28 2009 - 13:49:20 CST


I was wondering if I can generate the top file using antechamber having
the mol file. I know it should sound very trivial for Amber users but I
am a beginner and have read all the antechmaber related parts in Amber
manual and also the paper by Case et. al. But still was wondering if I
only can get the top file by:

antechamber -i test.mol -fi mol -o test.? -fo ?

I have the mol file generated by ACD/ChemSketch

Appreciate your help.


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