AMBER Archive (2009)

Subject: Re: [AMBER] "Could not find bond parameter"

From: George Tzotzos (gtzotzos_at_mac.com)
Date: Fri Jan 23 2009 - 12:16:34 CST

Hi everybody,

I am experiencing the following problem when trying to save the parameter file of my protein.

<saveamberparm> generates the following output:

Could not find bond parameter for: SH - SH

Building angle parameters.
Could not find angle parameter: HS - SH - SH
Could not find angle parameter: SH - SH - CT
etc.

I'm dealing with a small protein with 3 disulfide bonds.

I'm using leaprc.ff99SB as a forcefield

Any help in resolving this problem would be greatly appreciated

George

_______________________________________________
AMBER mailing list
AMBER_at_ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber