AMBER Archive (2009)
Subject: [AMBER] How to calculate cavity volume from MD structures?
From: ben rodriguez (bramber_at_live.com)
I am trying to find the volume of a cavity from a series of MD snapshots. My question: is there a tool included in Amber, or otherwise (commercial?) that will perform a volume calculation on a series of structures. I am trying to find the volume of the distal heme pocket of myoglobin mutants.