AMBER Archive (2009)

Subject: Re: [AMBER] Re: AMBER: ligand parameter

From: Bo Baker (ratuma2009_at_gmail.com)
Date: Sun Jan 11 2009 - 18:52:19 CST

Dear David:

>With regard to remote access and xleap, if you are using ssh, you can add
the -X option to forward your X session, and then you can open up xleap on
your local machine, assuming you have X11 or Cygwin/X installed on your
local machine.

I do use ssh and have x11 in the Mac. I try the following:

guanine.1% setenv AMBERHOME /usr/local/amber7
guanine.2% $AMBERHOME/exe/xleap -X

It just hang there and nothing happen. What is the exact command for add -X
option?

Thank you

Bo

On Mon, Jan 12, 2009 at 11:39 AM, David Watson <dewatson_at_olemiss.edu> wrote:

> On Jan 11, 2009, at 6:20 PM, Bo Baker wrote:
>
> Dear Ross:
>>
>> Thank you for your suggestion.
>>
>> My problem here is: I use remote access to amber and I don't have the
>> xleap
>> in my local PC. Also leaprc.ff99SB is not available for Amber7. Referring
>>
> <snip>
>
> With regard to remote access and xleap, if you are using ssh, you can add
> the -X option to forward your X session, and then you can open up xleap on
> your local machine, assuming you have X11 or Cygwin/X installed on your
> local machine.
>
> Hope that helps.
>
>
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