AMBER Archive (2009)

Subject: Re: [AMBER] ambpdb is changing atom names, a feature or bug?

From: David A. Case (case_at_biomaps.rutgers.edu)
Date: Fri Jan 09 2009 - 07:01:54 CST

On Fri, Jan 09, 2009, Markus Kaukonen wrote:
>
> I issue (in Amber 10)
> ambpdb -pqr -p prmtop < prmcrd > test.pdb
>
> but the atom names are not the same in 'prmtop' file and in 'test.pdb'

Use the -aatm (Amber atom names) flag to ambpdb.

...dac

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