AMBER Archive (2009)


From: David A. Case (
Date: Wed Jan 07 2009 - 13:29:35 CST

On Wed, Jan 07, 2009, Khaled Barakat wrote:
> I am trying to simulate a phophopeptide that includes a phosphorylated
> threonine residue. By following the mailing list I found an
> announcement for the production of AMBER force field parameters for
> phosphorylated amino acids in different protonation states. These
> parameters has been produced for phosphoserine, phosphothreonine,
> phosphotyrosine and phosphohistidine. They also provided the web
> link ( for downloading these
> parameters. Unfortunately, I couldn't access to this website.

The above is on old URL; try this one (taken from the Amber web page):


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