AMBER Archive (2008)

Subject: Re: AMBER: 3fe-4s cluster parameter file generation

From: Bill Ross (ross_at_cgl.ucsf.edu)
Date: Tue Sep 16 2008 - 12:47:00 CDT

> I am attaching the structure of my ligand. In that case is my prepc file
> connectivities alright.

No - look closely at the examples in

> http://amber.scripps.edu/doc/prep.html

I think what you want is (starting at top left and going clockwise)

 S M
 Fe M
 S E
 S M
 Fe M
 S M
 Fe M

LOOP
 <1st S to last Fe>

Bill
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