AMBER Archive (2008)

Subject: Re: AMBER: Trans proline

From: Barbault Florent (florent.barbault_at_paris7.jussieu.fr)
Date: Sun Jul 20 2008 - 01:27:37 CDT

Hello,

As far as I know, there is no difference in the proline parameters for
the cis or trans conformation.

Regards
Florent Barbault

On Sun, 20 Jul 2008 14:53:00 +0900
  "dipti lele" <diptisl86_at_gmail.com> wrote:
> Hello .
> I have to make a peptide with trans proline into it. How should I
>go
> about it using tleap? Are there any parameter files for trans
>proline
> available? By default tlarp added cis proline only. But NMR data of
>my
> peptide says that the proline is in trans. I am kind of new to the
>field.
> Please guide me to resolve the problem...
>
> Thanking you,...
> Regards
> Deepti Lele
>
>
> --

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