AMBER Archive (2008) - Jun 2008 By DateMost recent messages
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Starting: Sun Jun 01 2008 - 02:12:12 CDT
Ending: Mon Jun 30 2008 - 17:46:45 CDT
- RE: AMBER: SANDER and PMEMD with openmpi. Failure 'make test.pmemd' Francesco Pietra (Sun Jun 01 2008 - 02:12:12 CDT)
- AMBER: PCA - analysis Ibrahim Moustafa (Sun Jun 01 2008 - 13:00:35 CDT)
- Fw: RE: AMBER: SANDER and PMEMD with openmpi. NO MORE failure 'make test.pmemd' Francesco Pietra (Mon Jun 02 2008 - 05:22:38 CDT)
- Re: AMBER: ptraj has trouble with x-plor psf file from VMD Jufang Shan (Mon Jun 02 2008 - 10:52:28 CDT)
- AMBER: Building ppc64 AMBER10 with xlf fortran 11.1 Jarrod Smith (Mon Jun 02 2008 - 11:43:24 CDT)
- Re: AMBER: Jarzynski David Mobley (Mon Jun 02 2008 - 12:25:16 CDT)
- RE: AMBER: SANDER and PMEMD with openmpi. Failure 'make test.pmemd' Ross Walker (Mon Jun 02 2008 - 12:52:33 CDT)
- Re: AMBER: Building ppc64 AMBER10 with xlf fortran 11.1 David A. Case (Mon Jun 02 2008 - 12:56:16 CDT)
- AMBER: VMD file generation 4 - mdcrd ptraj analysis Campbell, Patrick (Mon Jun 02 2008 - 13:26:15 CDT)
- Re: AMBER: VMD file generation 4 - mdcrd ptraj analysis Carlos Simmerling (Mon Jun 02 2008 - 14:11:24 CDT)
- AMBER: MAXAT can not be changed for AMBERTool 1.0 Hu, Shaowen (JSC-SK)[USRA] (Mon Jun 02 2008 - 14:41:54 CDT)
- RE:AMBER: VMD file generation 4 - mdcrd ptraj analysis Campbell, Patrick (Mon Jun 02 2008 - 14:54:06 CDT)
- Re: AMBER: VMD file generation 4 - mdcrd ptraj analysis Carlos Simmerling (Mon Jun 02 2008 - 15:06:39 CDT)
- AMBER: VMD file generation 4 - mdcrd analysis Campbell, Patrick (Mon Jun 02 2008 - 15:21:00 CDT)
- AMBER: PCA analysis Ibrahim Moustafa (Mon Jun 02 2008 - 16:09:17 CDT)
- AMBER: Missing gaff angle parameters for dimethyl esters Lin, Pohan (Mon Jun 02 2008 - 16:20:24 CDT)
- AMBER: Error message: Install Amber9 on fedora 9 Chih-Ying Lin (Mon Jun 02 2008 - 17:33:42 CDT)
- Re: AMBER: Error message: Install Amber9 on fedora 9 David A. Case (Mon Jun 02 2008 - 18:04:48 CDT)
- Re: AMBER: MAXAT can not be changed for AMBERTool 1.0 David A. Case (Mon Jun 02 2008 - 18:15:38 CDT)
- Re: AMBER: note on the molsurf and "Assertion `sarg1 >= 0.0' failed" error David A. Case (Mon Jun 02 2008 - 18:23:46 CDT)
- AMBER: writing a script in amber Taufik Al-Sarraj (Mon Jun 02 2008 - 19:28:39 CDT)
- Re: AMBER: gasteiger is not working with ambertools 1.0 David A. Case (Mon Jun 02 2008 - 19:12:55 CDT)
- Re: AMBER: note on the molsurf and "Assertion `sarg1 >= 0.0' failed" error Kateryna Miroshnychenko (Tue Jun 03 2008 - 02:05:51 CDT)
- AMBER: corrupted restart file yavuzturkm_at_prc.boun.edu.tr (Tue Jun 03 2008 - 04:18:25 CDT)
- AMBER: Temperature controlling method in AMBER tinni sona (Tue Jun 03 2008 - 04:43:11 CDT)
- Re: AMBER: corrupted restart file Cenk \(Jenk\) Andac (Tue Jun 03 2008 - 05:13:29 CDT)
- Re: AMBER: corrupted restart file Carlos Simmerling (Tue Jun 03 2008 - 05:15:21 CDT)
- Re: AMBER: Missing gaff angle parameters for dimethyl esters Junmei Wang (Tue Jun 03 2008 - 08:19:25 CDT)
- AMBER: Trajectory in "Sietraj" Alfredo Quevedo (Tue Jun 03 2008 - 08:35:20 CDT)
- RE: AMBER: Trajectory in "Sietraj" Purisima, Enrico (Tue Jun 03 2008 - 08:55:20 CDT)
- Re: AMBER: Trajectory in "Sietraj" Alfredo Quevedo (Tue Jun 03 2008 - 09:08:56 CDT)
- Re: AMBER: Trajectory in "Sietraj" Florian Haberl (Tue Jun 03 2008 - 08:41:31 CDT)
- RE: AMBER: Trajectory in "Sietraj" Purisima, Enrico (Tue Jun 03 2008 - 09:39:49 CDT)
- Re: AMBER: gasteiger is not working with ambertools 1.0 Alan (Tue Jun 03 2008 - 09:44:07 CDT)
- Re: AMBER: Temperature controlling method in AMBER David A. Case (Tue Jun 03 2008 - 09:56:51 CDT)
- Re: AMBER: Trajectory in "Sietraj" Alfredo Quevedo (Tue Jun 03 2008 - 10:29:24 CDT)
- AMBER: solvate box : buffer list fatima.chami_at_durham.ac.uk (Tue Jun 03 2008 - 12:51:55 CDT)
- Re: AMBER: solvate box : buffer list David A. Case (Tue Jun 03 2008 - 13:22:16 CDT)
- Re: AMBER: Building ppc64 AMBER10 with xlf fortran 11.1 Jarrod Smith (Tue Jun 03 2008 - 14:29:31 CDT)
- RE: AMBER: Missing gaff angle parameters for dimethyl esters Lin, Pohan (Tue Jun 03 2008 - 14:56:32 CDT)
- RE: AMBER: Building ppc64 AMBER10 with xlf fortran 11.1 Ross Walker (Tue Jun 03 2008 - 15:43:43 CDT)
- Re: AMBER: drawing repeated units Taufik Al-Sarraj (Tue Jun 03 2008 - 17:25:59 CDT)
- RE: AMBER: drawing repeated units Ross Walker (Tue Jun 03 2008 - 16:50:23 CDT)
- Re: AMBER: drawing repeated units Taufik Al-Sarraj (Tue Jun 03 2008 - 18:58:25 CDT)
- RE: AMBER: drawing repeated units Ross Walker (Tue Jun 03 2008 - 18:49:54 CDT)
- Re: AMBER: solvate box : buffer list fatima.chami_at_durham.ac.uk (Wed Jun 04 2008 - 05:07:06 CDT)
- AMBER: How to calculate RMSIP after PCA analysis by PTRAJ? sychen (Wed Jun 04 2008 - 07:27:45 CDT)
- AMBER: problems with sleap Alan (Wed Jun 04 2008 - 10:40:04 CDT)
- AMBER: NMODE units and hrmax value for Langevine modes Yang, Lee-Wei (Wed Jun 04 2008 - 11:27:00 CDT)
- AMBER: amber installation on cluster Pankaj R. Daga (Wed Jun 04 2008 - 12:27:57 CDT)
- Re: AMBER: NMODE units and hrmax value for Langevine modes David A. Case (Wed Jun 04 2008 - 12:30:36 CDT)
- RE: AMBER: amber installation on cluster Ross Walker (Wed Jun 04 2008 - 12:54:36 CDT)
- Re: AMBER: amber installation on cluster David A. Case (Wed Jun 04 2008 - 12:55:39 CDT)
- AMBER: NAB documentation for programmers ramu_at_vt.edu (Wed Jun 04 2008 - 13:59:27 CDT)
- AMBER: ptraj imaging issue Vlad Cojocaru (Wed Jun 04 2008 - 14:07:44 CDT)
- Re: AMBER: drawing repeated units Taufik Al-Sarraj (Wed Jun 04 2008 - 15:17:57 CDT)
- AMBER: syn and anti conformation Rabin (Wed Jun 04 2008 - 14:29:58 CDT)
- Re: AMBER: syn and anti conformation Carlos Simmerling (Wed Jun 04 2008 - 14:34:31 CDT)
- Re: AMBER: ptraj imaging issue Jianyin Shao (Wed Jun 04 2008 - 16:25:27 CDT)
- Re: AMBER: problems with sleap David A. Case (Wed Jun 04 2008 - 18:52:00 CDT)
- RE: AMBER: NMODE units and hrmax value for Langevine modes Yang, Lee-Wei (Wed Jun 04 2008 - 22:55:45 CDT)
- Re: AMBER: Error message: Install Amber9 on fedora 9 Chih-Ying Lin (Wed Jun 04 2008 - 22:54:29 CDT)
- AMBER: MM-PBSA in AMBER 10 Daniel Oehme (Thu Jun 05 2008 - 00:27:39 CDT)
- Re: AMBER: problems with sleap Alan (Thu Jun 05 2008 - 01:48:03 CDT)
- AMBER: problem of install amber9 Xioling Chuang (Thu Jun 05 2008 - 03:37:27 CDT)
- Re: AMBER: ptraj imaging issue Vlad Cojocaru (Thu Jun 05 2008 - 03:48:43 CDT)
- RE: AMBER: problem of install amber9 Xioling Chuang (Thu Jun 05 2008 - 04:09:27 CDT)
- AMBER: Free energy of dissociation fatima.chami_at_durham.ac.uk (Thu Jun 05 2008 - 07:02:43 CDT)
- AMBER: NAN errors in Etot, EPtot, EKtot and EELEC Praveena Gopal (Thu Jun 05 2008 - 07:04:00 CDT)
- Re: AMBER: NAN errors in Etot, EPtot, EKtot and EELEC Carlos Simmerling (Thu Jun 05 2008 - 07:16:22 CDT)
- AMBER: Vaccum Simulations in PMEMD !! Sampath Koppole (Thu Jun 05 2008 - 07:53:35 CDT)
- Re: AMBER: Free energy of dissociation Gustavo Seabra (Thu Jun 05 2008 - 08:41:03 CDT)
- AMBER: netcdf configure returned 1 Jens Lattig (Thu Jun 05 2008 - 08:46:45 CDT)
- Re: AMBER: Vaccum Simulations in PMEMD !! Robert Duke (Thu Jun 05 2008 - 09:17:13 CDT)
- Re: AMBER: ptraj imaging issue Vlad Cojocaru (Thu Jun 05 2008 - 09:30:42 CDT)
- AMBER: netcdf configure returned 1 - PROBLEM SOLVED Jens Lattig (Thu Jun 05 2008 - 09:42:03 CDT)
- Re: AMBER: Free energy of dissociation fatima.chami_at_durham.ac.uk (Thu Jun 05 2008 - 10:13:03 CDT)
- AMBER: A problem of installing Amber10 Yicun Ni (Thu Jun 05 2008 - 10:55:53 CDT)
- Re: AMBER: ptraj imaging issue Jianyin Shao (Thu Jun 05 2008 - 11:23:52 CDT)
- AMBER: Nmode - entropy calculation of receptor - should I apply restraint? Seth Lilavivat (Thu Jun 05 2008 - 12:03:08 CDT)
- Re: AMBER: A problem of installing Amber10 David A. Case (Thu Jun 05 2008 - 12:49:58 CDT)
- Re: AMBER: NMODE units and hrmax value for Langevine modes David A. Case (Thu Jun 05 2008 - 13:12:24 CDT)
- Re: AMBER: A problem of installing Amber10 Harry Ni (Thu Jun 05 2008 - 13:27:23 CDT)
- Re: AMBER: Nmode - entropy calculation of receptor - should I apply restraint? David A. Case (Thu Jun 05 2008 - 13:50:16 CDT)
- Re: AMBER: A problem of installing Amber10 David A. Case (Thu Jun 05 2008 - 14:13:16 CDT)
- Re: AMBER: Error message: Install Amber9 on fedora 9 David A. Case (Thu Jun 05 2008 - 14:17:50 CDT)
- Re: AMBER: Free energy of dissociation David Mobley (Thu Jun 05 2008 - 11:22:24 CDT)
- AMBER: RE: solvating RNA in 8M urea box Ross Walker (Thu Jun 05 2008 - 19:12:42 CDT)
- AMBER: MM-PBSA in AMBER 10 Daniel Oehme (Thu Jun 05 2008 - 22:52:12 CDT)
- AMBER: Query on MM-PBSA Neha Gandhi (Fri Jun 06 2008 - 00:46:32 CDT)
- Re: AMBER: NAN errors in Etot, EPtot, EKtot and EELEC Praveena Gopal (Fri Jun 06 2008 - 01:16:40 CDT)
- AMBER: PROBLEM: AmberTools Installation using Ubuntu Jens Lattig (Fri Jun 06 2008 - 03:13:06 CDT)
- AMBER: Ptraj / ambmask | Using distance-based masks to strip a trajectory Ian (Fri Jun 06 2008 - 04:19:58 CDT)
- AMBER: Problem While Installing Amber Ranga Swamy (Fri Jun 06 2008 - 04:34:17 CDT)
- Re: AMBER: Ptraj / ambmask | Using distance-based masks to strip a trajectory Vlad Cojocaru (Fri Jun 06 2008 - 04:59:54 CDT)
- AMBER: NAN errors still exist Praveena Gopal (Fri Jun 06 2008 - 04:56:58 CDT)
- Re: AMBER: NAN errors still exist Carlos Simmerling (Fri Jun 06 2008 - 05:57:49 CDT)
- AMBER: VMD Movie .mdcrd file ptraj Campbell, Patrick (Fri Jun 06 2008 - 08:22:50 CDT)
- Re: AMBER: VMD Movie .mdcrd file ptraj David Watson (Fri Jun 06 2008 - 09:57:16 CDT)
- RE: AMBER: Problem While Installing Amber Ross Walker (Fri Jun 06 2008 - 10:30:26 CDT)
- Re: AMBER: Ptraj / ambmask | Using distance-based masks to strip a trajectory David Case (Fri Jun 06 2008 - 11:27:06 CDT)
- AMBER: NAB documentation David Case (Fri Jun 06 2008 - 11:24:44 CDT)
- Re: AMBER: PROBLEM: AmberTools Installation using Ubuntu David Case (Fri Jun 06 2008 - 11:25:45 CDT)
- AMBER: Problems simulating a protein-ligand complex Sasha Buzko (Fri Jun 06 2008 - 12:55:05 CDT)
- Re: AMBER: Ptraj / ambmask | Using distance-based masks to strip a trajectory Vlad Cojocaru (Fri Jun 06 2008 - 13:50:55 CDT)
- Re:AMBER:VMD Movie.mdcrd Campbell, Patrick (Fri Jun 06 2008 - 13:56:52 CDT)
- Re: AMBER: Problems simulating a protein-ligand complex David A. Case (Fri Jun 06 2008 - 13:59:52 CDT)
- Re: AMBER: A problem of installing Amber10 Harry Ni (Fri Jun 06 2008 - 14:00:19 CDT)
- Re: AMBER: A problem of installing Amber10 David A. Case (Fri Jun 06 2008 - 15:21:52 CDT)
- Re: AMBER: A problem of installing Amber10 Harry Ni (Fri Jun 06 2008 - 16:36:48 CDT)
- Re: AMBER: Problems simulating a protein-ligand complex Sasha Buzko (Fri Jun 06 2008 - 17:16:29 CDT)
- RE: AMBER: Problems simulating a protein-ligand complex Ross Walker (Fri Jun 06 2008 - 17:55:37 CDT)
- RE: AMBER: Problems simulating a protein-ligand complex Sasha Buzko (Fri Jun 06 2008 - 18:13:19 CDT)
- RE: AMBER: Problems simulating a protein-ligand complex Ross Walker (Fri Jun 06 2008 - 18:34:39 CDT)
- RE: AMBER: Problems simulating a protein-ligand complex Sasha Buzko (Fri Jun 06 2008 - 18:40:07 CDT)
- Re: AMBER: NAB documentation Ramu Anandakrishnan (Fri Jun 06 2008 - 23:08:51 CDT)
- AMBER: 100 short MD runs within a single Sander script? Sebastian Stolzenberg (Fri Jun 06 2008 - 23:55:37 CDT)
- RE: AMBER: Problems simulating a protein-ligand complex Ross Walker (Sat Jun 07 2008 - 00:15:32 CDT)
- RE: AMBER: 100 short MD runs within a single Sander script? Ross Walker (Sat Jun 07 2008 - 00:22:36 CDT)
- Re: AMBER: Problems simulating a protein-ligand complex Sasha Buzko (Sat Jun 07 2008 - 00:37:53 CDT)
- Re: AMBER: Problems simulating a protein-ligand complex Adrian Roitberg (Sat Jun 07 2008 - 07:36:21 CDT)
- Re: AMBER: Problems simulating a protein-ligand complex M. L. Dodson (Sat Jun 07 2008 - 09:53:57 CDT)
- AMBER: Problem of Ptraj analyze matrix Qi Yan (Sat Jun 07 2008 - 13:24:55 CDT)
- AMBER: Combine mdcrd while stripping WAT problem Francesco Pietra (Sun Jun 08 2008 - 10:40:07 CDT)
- AMBER: problem in starting sander Qiuting Hong (Sun Jun 08 2008 - 13:25:43 CDT)
- Re: AMBER: Combine mdcrd while stripping WAT problem Gustavo Seabra (Sun Jun 08 2008 - 13:58:34 CDT)
- Re: AMBER: Combine mdcrd while stripping WAT problem Carlos Simmerling (Sun Jun 08 2008 - 14:33:47 CDT)
- Re: AMBER: problem in starting sander Carlos Simmerling (Sun Jun 08 2008 - 14:53:33 CDT)
- Re: AMBER: problem in starting sander Qiuting Hong (Sun Jun 08 2008 - 16:52:34 CDT)
- RE: AMBER: problem in starting sander Ross Walker (Sun Jun 08 2008 - 17:30:17 CDT)
- Re: AMBER: NAB documentation David A. Case (Sun Jun 08 2008 - 20:38:05 CDT)
- Re: AMBER: Problem of Ptraj analyze matrix David A. Case (Sun Jun 08 2008 - 20:38:13 CDT)
- Re: AMBER: problem in starting sander Qiuting Hong (Sun Jun 08 2008 - 21:40:52 CDT)
- Re: AMBER: problem in starting sander Carlos Simmerling (Sun Jun 08 2008 - 23:36:32 CDT)
- AMBER: MM-PBSA and delphi Neha Gandhi (Mon Jun 09 2008 - 00:49:54 CDT)
- Re: AMBER: MM-PBSA and delphi Neha Gandhi (Mon Jun 09 2008 - 00:56:00 CDT)
- Re: AMBER: MM-PBSA and delphi Navnit Kumar Mishra (Mon Jun 09 2008 - 04:05:38 CDT)
- Re: AMBER: MM-PBSA and delphi Neha Gandhi (Mon Jun 09 2008 - 04:57:21 CDT)
- AMBER: Problem of Ptraj analyze matrix Qi Yan (Mon Jun 09 2008 - 08:37:01 CDT)
- Re: AMBER: Problem of Ptraj analyze matrix Adrian Roitberg (Mon Jun 09 2008 - 08:51:42 CDT)
- RE: AMBER: Problem of Ptraj analyze matrix Qi Yan (Mon Jun 09 2008 - 09:47:16 CDT)
- Re: AMBER: Problems simulating a protein-ligand complex Sasha Buzko (Mon Jun 09 2008 - 12:57:20 CDT)
- RE: AMBER: MM-PBSA and delphi Qi Yan (Mon Jun 09 2008 - 14:58:28 CDT)
- AMBER: Calcium and Magnesium LJ parameters Daniel Smith (Mon Jun 09 2008 - 18:02:28 CDT)
- Re: AMBER: Combine mdcrd while stripping WAT problem Francesco Pietra (Tue Jun 10 2008 - 02:37:34 CDT)
- Re: AMBER: PROBLEM: AmberTools Installation using Ubuntu Jens Lattig (Tue Jun 10 2008 - 03:00:08 CDT)
- Re: AMBER: Combine mdcrd while stripping WAT problem Carlos Simmerling (Tue Jun 10 2008 - 03:03:02 CDT)
- Re: AMBER: PROBLEM: AmberTools Installation using Ubuntu Mark Williamson (Tue Jun 10 2008 - 06:31:48 CDT)
- AMBER: Help--Great distortion of N terminal nitrogen at the very beginning of heating xiaonan zhang (Tue Jun 10 2008 - 07:24:02 CDT)
- Re: AMBER: Help--Great distortion of N terminal nitrogen at the very beginning of heating David A. Case (Tue Jun 10 2008 - 07:50:27 CDT)
- AMBER: SMD pulling velocity fatima.chami_at_durham.ac.uk (Tue Jun 10 2008 - 09:06:38 CDT)
- Re: AMBER: SMD pulling velocity Gustavo Seabra (Tue Jun 10 2008 - 09:22:48 CDT)
- Re: AMBER: Help--Great distortion of N terminal nitrogen at the very beginning of heating xiaonan zhang (Tue Jun 10 2008 - 09:23:15 CDT)
- AMBER: how to calculate the interaction energy Wang,Ying (Tue Jun 10 2008 - 09:52:10 CDT)
- Re: AMBER: how to calculate the interaction energy Thomas Steinbrecher (Tue Jun 10 2008 - 11:45:16 CDT)
- Re: AMBER: how to calculate the interaction energy Wang,Ying (Tue Jun 10 2008 - 14:12:17 CDT)
- AMBER: amber10 installation problem Ed Pate (Tue Jun 10 2008 - 15:59:47 CDT)
- AMBER: PTRAJ - Segmentation Fault dpandit_at_brandeis.edu (Tue Jun 10 2008 - 16:36:08 CDT)
- AMBER: Simulating complexes with magnesium atoms Sasha Buzko (Tue Jun 10 2008 - 16:32:13 CDT)
- Re: AMBER: amber10 installation problem Robert Duke (Tue Jun 10 2008 - 17:02:54 CDT)
- RE: AMBER: amber10 installation problem Ross Walker (Tue Jun 10 2008 - 17:04:51 CDT)
- Re: AMBER: PROBLEM: AmberTools Installation using Ubuntu Jens Lattig (Wed Jun 11 2008 - 03:59:12 CDT)
- Re: AMBER: Ptraj / ambmask | Using distance-based masks to strip a trajectory Ian (Wed Jun 11 2008 - 05:53:42 CDT)
- AMBER: box shape changed at NVT fatima.chami_at_durham.ac.uk (Wed Jun 11 2008 - 09:25:09 CDT)
- Re: AMBER: Combine mdcrd while stripping WAT problem Francesco Pietra (Wed Jun 11 2008 - 09:57:59 CDT)
- AMBER: QM/MM Taufik Al-Sarraj (Wed Jun 11 2008 - 11:09:24 CDT)
- Re: AMBER: PROBLEM: AmberTools Installation using Ubuntu David A. Case (Wed Jun 11 2008 - 10:15:00 CDT)
- Re: AMBER: box shape changed at NVT David A. Case (Wed Jun 11 2008 - 10:18:46 CDT)
- Re: AMBER: QM/MM Gustavo Seabra (Wed Jun 11 2008 - 10:22:16 CDT)
- Re: AMBER: QM/MM Taufik Al-Sarraj (Wed Jun 11 2008 - 11:28:34 CDT)
- AMBER: Equilibration/Heating - Protein fixed -Problem dpandit_at_brandeis.edu (Wed Jun 11 2008 - 10:31:40 CDT)
- Re: AMBER: Ptraj / ambmask | Using distance-based masks to strip a trajectory Jianyin Shao (Wed Jun 11 2008 - 10:55:12 CDT)
- Re: AMBER: PTRAJ - Segmentation Fault Jianyin Shao (Wed Jun 11 2008 - 11:01:07 CDT)
- RE: AMBER: Equilibration/Heating - Protein fixed -Problem Vahdati N. (Wed Jun 11 2008 - 12:38:50 CDT)
- Re: AMBER: PTRAJ - Segmentation Fault dpandit_at_brandeis.edu (Wed Jun 11 2008 - 12:48:54 CDT)
- Re: AMBER: Help--Great distortion of N terminal nitrogen at the very beginning of heating David A. Case (Wed Jun 11 2008 - 12:53:20 CDT)
- Re: AMBER: PTRAJ - Segmentation Fault Thomas Cheatham (Wed Jun 11 2008 - 13:15:00 CDT)
- RE: AMBER: Equilibration/Heating - Protein fixed -Problem dpandit_at_brandeis.edu (Wed Jun 11 2008 - 13:17:56 CDT)
- AMBER: sander.MPI / openmpi on PBS Arturas Ziemys (Wed Jun 11 2008 - 13:59:52 CDT)
- AMBER: 2D RMS plot Steve Spronk (Wed Jun 11 2008 - 14:18:32 CDT)
- AMBER: Coordinated Zinc Khaled Barakat (Wed Jun 11 2008 - 14:29:18 CDT)
- AMBER: Trajectory - Average Structure - Equilibration dpandit_at_brandeis.edu (Wed Jun 11 2008 - 14:37:46 CDT)
- Re: AMBER: PTRAJ - Segmentation Fault dpandit_at_brandeis.edu (Wed Jun 11 2008 - 14:40:25 CDT)
- AMBER: Question for how to get all eigenvalues by "analyze matrix" Qi Yan (Wed Jun 11 2008 - 16:34:40 CDT)
- Re: AMBER: 2D RMS plot Jianyin Shao (Wed Jun 11 2008 - 17:17:43 CDT)
- AMBER: Antechamber and topology file TAEJIN KIM (Wed Jun 11 2008 - 18:05:14 CDT)
- Re: AMBER: Combine mdcrd while stripping WAT problem Alexander Metz (Thu Jun 12 2008 - 00:59:18 CDT)
- Re: AMBER: Combine mdcrd while stripping WAT problem Francesco Pietra (Thu Jun 12 2008 - 02:09:28 CDT)
- Re: AMBER: Combine mdcrd while stripping WAT problem Alexander Metz (Thu Jun 12 2008 - 03:04:08 CDT)
- Re: AMBER: Combine mdcrd while stripping WAT problem Carlos Simmerling (Thu Jun 12 2008 - 03:05:15 CDT)
- AMBER: updating documentation Alan (Thu Jun 12 2008 - 04:52:40 CDT)
- AMBER: using Velocity-Verlet algorithm oguz gurbulak (Thu Jun 12 2008 - 07:07:20 CDT)
- RE: AMBER: 2D RMS plot Steve Spronk (Thu Jun 12 2008 - 07:42:41 CDT)
- AMBER: anisotropic pressure scaling ntp=2 fatima.chami_at_durham.ac.uk (Thu Jun 12 2008 - 08:18:13 CDT)
- Re: AMBER: anisotropic pressure scaling ntp=2 David A. Case (Thu Jun 12 2008 - 10:13:52 CDT)
- Re: AMBER: updating documentation David A. Case (Thu Jun 12 2008 - 10:10:36 CDT)
- Re: AMBER: Coordinated Zinc David A. Case (Thu Jun 12 2008 - 10:59:42 CDT)
- Re: AMBER: Antechamber and topology file David A. Case (Thu Jun 12 2008 - 11:03:50 CDT)
- Re: AMBER: using Velocity-Verlet algorithm David A. Case (Thu Jun 12 2008 - 11:09:49 CDT)
- AMBER: SMD RESTRAINTS fatima.chami_at_durham.ac.uk (Thu Jun 12 2008 - 11:23:00 CDT)
- AMBER: Compile amber10 parallel with suppied LAM James W. Caldwell (Thu Jun 12 2008 - 11:31:03 CDT)
- Re: AMBER: SMD RESTRAINTS Adrian Roitberg (Thu Jun 12 2008 - 11:51:56 CDT)
- Re: AMBER: SMD RESTRAINTS fatima.chami_at_durham.ac.uk (Thu Jun 12 2008 - 12:07:49 CDT)
- RE: AMBER: Compile amber10 parallel with suppied LAM James W. Caldwell (Thu Jun 12 2008 - 12:32:13 CDT)
- Re: AMBER: Compile amber10 parallel with suppied LAM Gustavo Seabra (Thu Jun 12 2008 - 12:39:34 CDT)
- AMBER: How to get all eigenvalues by "analyze matrix" Qi Yan (Thu Jun 12 2008 - 12:39:52 CDT)
- Re: AMBER: potassium ion Lars Skjærven (Thu Jun 12 2008 - 12:46:36 CDT)
- RE: AMBER: Compile amber10 parallel with suppied LAM James W. Caldwell (Thu Jun 12 2008 - 13:08:54 CDT)
- Re: AMBER: Compile amber10 parallel with suppied LAM Gustavo Seabra (Thu Jun 12 2008 - 13:20:24 CDT)
- Re: AMBER: SMD RESTRAINTS Adrian Roitberg (Thu Jun 12 2008 - 14:23:26 CDT)
- Re: AMBER: updating documentation Alan (Thu Jun 12 2008 - 18:09:24 CDT)
- AMBER: Sander crashes >99999 atoms plmallip_at_mail.uh.edu (Thu Jun 12 2008 - 18:26:57 CDT)
- Re: AMBER: Sander crashes >99999 atoms David A. Case (Thu Jun 12 2008 - 20:25:31 CDT)
- Re: AMBER: Sander crashes >99999 atoms plmallip_at_mail.uh.edu (Thu Jun 12 2008 - 23:47:47 CDT)
- AMBER: PCAL and polar contribution in the output file Neha Gandhi (Fri Jun 13 2008 - 00:42:54 CDT)
- AMBER: MM-GBSA with very positive GB value Catein Catherine (Fri Jun 13 2008 - 02:05:02 CDT)
- Re: AMBER: MM-GBSA with very positive GB value Carlos Simmerling (Fri Jun 13 2008 - 02:46:55 CDT)
- Re: AMBER: Coordinated Zinc FyD (Fri Jun 13 2008 - 02:56:08 CDT)
- Re: AMBER: updating documentation David A. Case (Fri Jun 13 2008 - 11:52:14 CDT)
- Re: AMBER: Sander crashes >99999 atoms David A. Case (Fri Jun 13 2008 - 11:59:32 CDT)
- RE: AMBER: Compile amber10 parallel with suppied LAM James W. Caldwell (Fri Jun 13 2008 - 12:06:19 CDT)
- RE: AMBER: Compile amber10 parallel with suppied LAM James W. Caldwell (Fri Jun 13 2008 - 12:17:57 CDT)
- AMBER: amber10 make fails for static/parallel James W. Caldwell (Fri Jun 13 2008 - 17:50:19 CDT)
- RE: AMBER: MM-GBSA with very positive GB value Catein Catherine (Fri Jun 13 2008 - 20:49:53 CDT)
- Re: AMBER: PROBLEM: AmberTools Installation using Ubuntu Mark Williamson (Sat Jun 14 2008 - 10:13:18 CDT)
- Re: AMBER: PROBLEM: AmberTools Installation using Ubuntu David A. Case (Sat Jun 14 2008 - 14:09:02 CDT)
- Re: AMBER: potassium ion Bill Ross (Sat Jun 14 2008 - 15:04:31 CDT)
- Re: AMBER: PCAL and polar contribution in the output file Hannes Kopitz (Sun Jun 15 2008 - 08:30:23 CDT)
- Re: AMBER: PCAL and polar contribution in the output file Neha Gandhi (Sun Jun 15 2008 - 08:56:20 CDT)
- AMBER: Ewald error estimate Pavan G (Sun Jun 15 2008 - 09:22:48 CDT)
- AMBER: Problem with running refinement of NMR structures with RDCs Qi Zhang (Sun Jun 15 2008 - 15:20:21 CDT)
- Re: AMBER: Problem with running refinement of NMR structures with RDCs David A. Case (Sun Jun 15 2008 - 20:50:53 CDT)
- AMBER: Eigenmode dynamics in Ptraj fatima.chami_at_durham.ac.uk (Mon Jun 16 2008 - 07:59:42 CDT)
- Re: AMBER: problems with sleap David A. Case (Mon Jun 16 2008 - 10:48:42 CDT)
- Re: AMBER: problems with sleap Alan (Mon Jun 16 2008 - 11:07:24 CDT)
- AMBER: the SPCFW water model Vlad Cojocaru (Mon Jun 16 2008 - 11:19:34 CDT)
- AMBER: sander.MPI / parallel Arturas Ziemys (Mon Jun 16 2008 - 12:00:34 CDT)
- Re: AMBER: sander.MPI / parallel Carlos Simmerling (Mon Jun 16 2008 - 12:43:39 CDT)
- AMBER: [Fwd: segmentation fault in nmode] Guillaume Renvez (Mon Jun 16 2008 - 09:31:12 CDT)
- Re: AMBER: sander.MPI / parallel Arturas Ziemys (Mon Jun 16 2008 - 12:56:57 CDT)
- Re: AMBER: sander.MPI / parallel David LeBard (Mon Jun 16 2008 - 13:08:20 CDT)
- Re: AMBER: sander.MPI / parallel David LeBard (Mon Jun 16 2008 - 13:07:21 CDT)
- Re: AMBER: sander.MPI / parallel Arturas Ziemys (Mon Jun 16 2008 - 13:19:36 CDT)
- Re: AMBER: sander.MPI / parallel Carlos Simmerling (Mon Jun 16 2008 - 13:28:04 CDT)
- Re: AMBER: sander.MPI / parallel David A. Case (Mon Jun 16 2008 - 13:33:35 CDT)
- Re: AMBER: problems with sleap Qi Zhang (Mon Jun 16 2008 - 06:46:26 CDT)
- AMBER: about resp charges WanJ Ding (Mon Jun 16 2008 - 14:44:55 CDT)
- AMBER: IRED to time correlation fatima.chami_at_durham.ac.uk (Mon Jun 16 2008 - 15:25:22 CDT)
- Re: AMBER: [Fwd: segmentation fault in nmode] David A. Case (Mon Jun 16 2008 - 18:42:47 CDT)
- Re: AMBER: [Fwd: segmentation fault in nmode] JAMES W CALDWELL (Mon Jun 16 2008 - 19:53:03 CDT)
- AMBER: program to calculate rmsd rams rams (Mon Jun 16 2008 - 21:28:24 CDT)
- AMBER: How to solve - Missing BELE for MM in 1 in amber. Thomas Leonard (Mon Jun 16 2008 - 22:05:59 CDT)
- AMBER: How to solve - Missing BELE for MM in 1 in amber. Thomas Leonard (Mon Jun 16 2008 - 22:06:01 CDT)
- Re: AMBER: [Fwd: segmentation fault in nmode] Guillaume Renvez (Tue Jun 17 2008 - 02:50:33 CDT)
- Re: AMBER: [Fwd: segmentation fault in nmode] Guillaume Renvez (Tue Jun 17 2008 - 02:48:34 CDT)
- RE: AMBER: program to calculate rmsd Ross Walker (Tue Jun 17 2008 - 03:26:53 CDT)
- Re: AMBER: How to solve - Missing BELE for MM in 1 in amber. Hannes Kopitz (Tue Jun 17 2008 - 03:32:31 CDT)
- AMBER: improving GAFF sulfonamide parameters Floris Buelens (Tue Jun 17 2008 - 04:57:46 CDT)
- AMBER: ligand complexed simulation Siddharth Rastogi (Tue Jun 17 2008 - 05:56:15 CDT)
- AMBER: suggestion for next amberTools 1.1 Alan (Tue Jun 17 2008 - 06:01:06 CDT)
- Re: AMBER: ligand complexed simulation mori_at_cerm.unifi.it (Tue Jun 17 2008 - 06:15:11 CDT)
- Re: AMBER: about resp charges FyD (Tue Jun 17 2008 - 07:58:03 CDT)
- AMBER: "Dumping RAW 2D RMS data is not yet implemented"? Steve Spronk (Tue Jun 17 2008 - 09:00:08 CDT)
- Re: AMBER: "Dumping RAW 2D RMS data is not yet implemented"? David A. Case (Tue Jun 17 2008 - 10:18:08 CDT)
- Re: AMBER: "Dumping RAW 2D RMS data is not yet implemented"? Jianyin Shao (Tue Jun 17 2008 - 10:36:01 CDT)
- Re: AMBER: suggestion for next amberTools 1.1 David A. Case (Tue Jun 17 2008 - 10:42:14 CDT)
- RE: AMBER: "Dumping RAW 2D RMS data is not yet implemented"? Steve Spronk (Tue Jun 17 2008 - 10:54:04 CDT)
- AMBER: to understand GAFF: about A and B coefficients Alan (Tue Jun 17 2008 - 11:42:34 CDT)
- Re: AMBER: to understand GAFF: about A and B coefficients David A. Case (Tue Jun 17 2008 - 11:52:41 CDT)
- AMBER: multiple dihedral restraints using group (in Amber 10) mkseo (Tue Jun 17 2008 - 16:00:50 CDT)
- AMBER: MM-PBSA Neha Gandhi (Wed Jun 18 2008 - 02:37:33 CDT)
- Re: AMBER: multiple dihedral restraints using group (in Amber 10) fatima.chami_at_durham.ac.uk (Wed Jun 18 2008 - 05:05:40 CDT)
- AMBER: Eigenmode dynamics - imaging traj fatima.chami_at_durham.ac.uk (Wed Jun 18 2008 - 05:09:26 CDT)
- AW: AMBER: MM-PBSA Alexander Metz (Wed Jun 18 2008 - 05:43:18 CDT)
- Re: AMBER: Eigenmode dynamics - imaging traj E.M. (Wed Jun 18 2008 - 06:16:49 CDT)
- Re: AMBER: Eigenmode dynamics - imaging traj Myunggi Yi (Wed Jun 18 2008 - 08:33:07 CDT)
- AMBER: about gaff.dat in ambeTools 1.0 Alan (Wed Jun 18 2008 - 09:44:02 CDT)
- Re: AMBER: MM-PBSA Miguel Ortiz-Lombardía (Wed Jun 18 2008 - 09:41:12 CDT)
- AMBER: ptraj fatima.chami_at_durham.ac.uk (Wed Jun 18 2008 - 10:21:50 CDT)
- libpdb, ptraj, and nab Was: Re: AMBER: suggestion for next amberTools 1.1 M. L. Dodson (Wed Jun 18 2008 - 10:43:44 CDT)
- AMBER: cross correlation function using iRED matrix fatima.chami_at_durham.ac.uk (Wed Jun 18 2008 - 12:07:25 CDT)
- Re: AMBER: cross correlation function using iRED matrix Myunggi Yi (Wed Jun 18 2008 - 13:07:03 CDT)
- AMBER: tip3p water and shake Wang,Ying (Wed Jun 18 2008 - 15:07:13 CDT)
- Re: AMBER: about resp charges wanjian ding (Wed Jun 18 2008 - 15:43:35 CDT)
- RE: AMBER: tip3p water and shake Ross Walker (Wed Jun 18 2008 - 16:35:30 CDT)
- AMBER: sp carbon notation? Laura Benton (Wed Jun 18 2008 - 18:16:35 CDT)
- Re: AMBER: sp carbon notation? David A. Case (Wed Jun 18 2008 - 19:22:14 CDT)
- Re: libpdb, ptraj, and nab Was: Re: AMBER: suggestion for next amberTools 1.1 David A. Case (Wed Jun 18 2008 - 19:32:36 CDT)
- RE: AMBER: tip3p water and shake Wang,Ying (Wed Jun 18 2008 - 20:03:55 CDT)
- AMBER: questions about gaff yzhao (Wed Jun 18 2008 - 21:01:45 CDT)
- Re: AMBER: questions about gaff Mark Williamson (Wed Jun 18 2008 - 21:35:42 CDT)
- RE: AMBER: tip3p water and shake Wang,Ying (Wed Jun 18 2008 - 22:44:27 CDT)
- AMBER: [Fwd: failure to load box parameters] Daniel Smith (Wed Jun 18 2008 - 22:58:10 CDT)
- AMBER: How to create average structure? Shen, Lingling (Wed Jun 18 2008 - 23:44:03 CDT)
- Re: AMBER: How to create average structure? Carlos Simmerling (Wed Jun 18 2008 - 23:52:35 CDT)
- Re: AMBER: tip3p water and shake David A. Case (Thu Jun 19 2008 - 00:15:48 CDT)
- Re: AMBER: [Fwd: failure to load box parameters] David A. Case (Thu Jun 19 2008 - 00:35:53 CDT)
- AMBER: how to extract x,y,z of a set of atoms from an MD trajectories fatima.chami_at_durham.ac.uk (Thu Jun 19 2008 - 04:16:52 CDT)
- AMBER: Correlation functions from iRED analysis Samuel Genheden (a03samge) (Thu Jun 19 2008 - 05:22:53 CDT)
- AMBER: Installation Problem of AMBER10 bhargav patel (Thu Jun 19 2008 - 05:57:26 CDT)
- Re: AMBER: Installation Problem of AMBER10 Carlos Simmerling (Thu Jun 19 2008 - 06:05:21 CDT)
- Re: AMBER: Correlation functions from iRED analysis Myunggi Yi (Thu Jun 19 2008 - 07:52:55 CDT)
- RE: AMBER: Correlation functions from iRED analysis Samuel Genheden (a03samge) (Thu Jun 19 2008 - 08:10:51 CDT)
- Re: AMBER: Correlation functions from iRED analysis Myunggi Yi (Thu Jun 19 2008 - 08:14:51 CDT)
- RE: AMBER: Correlation functions from iRED analysis Samuel Genheden (a03samge) (Thu Jun 19 2008 - 08:33:46 CDT)
- RE: AMBER: Correlation functions from iRED analysis fatima.chami_at_durham.ac.uk (Thu Jun 19 2008 - 08:43:39 CDT)
- RE: AMBER: Correlation functions from iRED analysis fatima.chami_at_durham.ac.uk (Thu Jun 19 2008 - 08:46:22 CDT)
- AMBER: How to extract solvent box information from .rst or .mdcrd files? Panwang Zhou (Thu Jun 19 2008 - 09:13:18 CDT)
- Re: AMBER: How to extract solvent box information from .rst or .mdcrd files? fatima.chami_at_durham.ac.uk (Thu Jun 19 2008 - 09:47:50 CDT)
- Re: AMBER: Installation Problem of AMBER10 David A. Case (Thu Jun 19 2008 - 09:53:03 CDT)
- Re: Re: AMBER: How to extract solvent box information from .rst or .mdcrd files? Panwang Zhou (Thu Jun 19 2008 - 10:34:02 CDT)
- SV: AMBER: Correlation functions from iRED analysis Samuel Genheden (a03samge) (Thu Jun 19 2008 - 10:53:29 CDT)
- Re: Re: AMBER: How to extract solvent box information from .rst or .mdcrd files? fatima.chami_at_durham.ac.uk (Thu Jun 19 2008 - 11:00:32 CDT)
- Re: SV: AMBER: Correlation functions from iRED analysis fatima.chami_at_durham.ac.uk (Thu Jun 19 2008 - 11:05:36 CDT)
- Re: AMBER: Correlation functions from iRED analysis Myunggi Yi (Thu Jun 19 2008 - 11:06:36 CDT)
- Re: AMBER: Installation Problem of AMBER10 Bill Ross (Thu Jun 19 2008 - 12:31:42 CDT)
- SV: SV: AMBER: Correlation functions from iRED analysis Samuel Genheden (a03samge) (Thu Jun 19 2008 - 15:06:17 CDT)
- AMBER: simple sander James W. Caldwell (Thu Jun 19 2008 - 18:30:39 CDT)
- Re: AMBER: [Fwd: segmentation fault in nmode] David A. Case (Thu Jun 19 2008 - 19:22:34 CDT)
- Re: AMBER: simple sander David A. Case (Thu Jun 19 2008 - 20:40:46 CDT)
- Re: AMBER: simple sander JAMES W CALDWELL (Thu Jun 19 2008 - 20:47:32 CDT)
- AMBER: ligand complexed simulation Siddharth Rastogi (Fri Jun 20 2008 - 02:14:18 CDT)
- AMBER: GAFF for organic crystals Rabone, Jeremy (Fri Jun 20 2008 - 03:05:18 CDT)
- Re: AMBER: Installation Problem of AMBER10 bhargav patel (Fri Jun 20 2008 - 04:07:12 CDT)
- AMBER: trajout input Thomas Leonard (Fri Jun 20 2008 - 04:23:55 CDT)
- Re: AMBER: trajout input Barbault Florent (Fri Jun 20 2008 - 04:43:28 CDT)
- Re: AMBER: trajout input Thomas Leonard (Fri Jun 20 2008 - 05:05:55 CDT)
- AMBER: rdparm help Alan (Fri Jun 20 2008 - 06:12:17 CDT)
- Re: Re: AMBER: questions about gaff Steven (Fri Jun 20 2008 - 09:11:08 CDT)
- Re: AMBER: rdparm help Thomas Cheatham (Fri Jun 20 2008 - 09:35:36 CDT)
- AMBER: AmberTools 1.0 installation error: x86_64 Matthew Danielson (Fri Jun 20 2008 - 10:44:21 CDT)
- Re: AMBER: AmberTools 1.0 installation error: x86_64 David A. Case (Fri Jun 20 2008 - 11:17:35 CDT)
- Re: AMBER: trajout input Thomas Cheatham III (Fri Jun 20 2008 - 12:57:43 CDT)
- AMBER: Amber 10 timing Ed Pate (Fri Jun 20 2008 - 12:08:37 CDT)
- Re: AMBER: Installation Problem of AMBER10 David A. Case (Fri Jun 20 2008 - 14:34:09 CDT)
- Re: AMBER: Installation Problem of AMBER10 Bill Ross (Fri Jun 20 2008 - 15:46:35 CDT)
- Re: AMBER: Amber 10 timing Robert Duke (Fri Jun 20 2008 - 16:29:00 CDT)
- AMBER: SIZE.h problems Å·ÑôµÂ·½ (Sat Jun 21 2008 - 07:33:49 CDT)
- Re: AMBER: SIZE.h problems Mark Williamson (Sat Jun 21 2008 - 16:22:37 CDT)
- AMBER: (no subject) Daniel B. Kaplan (Sun Jun 22 2008 - 18:46:17 CDT)
- Re: AMBER: trajout input Swarup Gupta (Sun Jun 22 2008 - 22:01:31 CDT)
- AMBER: MM-PBSA in AMBER 10 Daniel Oehme (Mon Jun 23 2008 - 00:07:34 CDT)
- AMBER: How to adjust the problem of "Vlimit exceeded" Biman Jana (Mon Jun 23 2008 - 02:28:27 CDT)
- Re: AMBER: [Fwd: segmentation fault in nmode] Guillaume Renvez (Mon Jun 23 2008 - 03:27:27 CDT)
- AMBER: How to confirm atom types of small molecule perceived by antechamber xiaonan zhang (Mon Jun 23 2008 - 03:39:30 CDT)
- AMBER: source of AMBER9 Germain Vallverdu (Mon Jun 23 2008 - 09:09:29 CDT)
- Re: AMBER: How to confirm atom types of small molecule perceived by antechamber David A. Case (Mon Jun 23 2008 - 09:56:17 CDT)
- AMBER: amber10/dat/leap/cmd/README need update Alan (Mon Jun 23 2008 - 09:59:21 CDT)
- Re: AMBER: How to confirm atom types of small molecule perceived by antechamber Junmei Wang (Mon Jun 23 2008 - 09:57:18 CDT)
- Re: AMBER: (no subject) Junmei Wang (Mon Jun 23 2008 - 10:01:39 CDT)
- Re: AMBER: amber10/dat/leap/cmd/README need update Vlad Cojocaru (Mon Jun 23 2008 - 10:12:29 CDT)
- Re: AMBER: How to adjust the problem of "Vlimit exceeded" David A. Case (Mon Jun 23 2008 - 10:16:05 CDT)
- Re: AMBER: GAFF for organic crystals Junmei Wang (Mon Jun 23 2008 - 10:16:50 CDT)
- Re: AMBER: rdparm help Alan (Mon Jun 23 2008 - 10:23:50 CDT)
- AMBER: Antechamber Question Daniel B. Kaplan (Mon Jun 23 2008 - 11:51:28 CDT)
- Re: AMBER: [Fwd: failure to load box parameters] Daniel Smith (Mon Jun 23 2008 - 16:26:22 CDT)
- AMBER: problems form the pdb to the mol2 Rilei Yu (Mon Jun 23 2008 - 20:01:33 CDT)
- AMBER: problems form the pdb to the mol2 Rilei Yu (Mon Jun 23 2008 - 20:01:33 CDT)
- AMBER: problems form the pdb to the mol2 Rilei Yu (Mon Jun 23 2008 - 20:01:33 CDT)
- AMBER: MM-PBSA in AMBER 10 Daniel Oehme (Mon Jun 23 2008 - 20:32:24 CDT)
- AMBER: problems form the pdb to the mol2 Rilei Yu (Mon Jun 23 2008 - 20:01:33 CDT)
- AMBER: problems form the pdb to the mol2 Rilei Yu (Mon Jun 23 2008 - 20:01:33 CDT)
- AMBER: problems form the pdb to the mol2 Rilei Yu (Mon Jun 23 2008 - 20:01:33 CDT)
- Re: AMBER: MM-PBSA in AMBER 10 David A. Case (Mon Jun 23 2008 - 20:47:44 CDT)
- Re: AMBER: problems form the pdb to the mol2 David A. Case (Mon Jun 23 2008 - 20:51:46 CDT)
- AMBER: dihedral energy calculation inconsistent with gaussian's result Q733 (Mon Jun 23 2008 - 21:43:36 CDT)
- Re: AMBER: dihedral energy calculation inconsistent with gaussian's result Jerome.GOLEBIOWSKI_at_unice.fr (Tue Jun 24 2008 - 03:01:35 CDT)
- Re: AMBER: Installation Problem of AMBER10 bhargav patel (Tue Jun 24 2008 - 05:06:45 CDT)
- AMBER: unsubscribe amber sanket.deshmukh_at_ucd.ie (Tue Jun 24 2008 - 06:07:42 CDT)
- AMBER: A-prime RNA input file Å·ÑôµÂ·½ (Tue Jun 24 2008 - 06:16:27 CDT)
- Re: AMBER: Antechamber Question Junmei Wang (Tue Jun 24 2008 - 08:33:58 CDT)
- Re: AMBER: about gaff.dat in ambeTools 1.0 Junmei Wang (Tue Jun 24 2008 - 08:37:09 CDT)
- Re: AMBER: problems form the pdb to the mol2 Junmei Wang (Tue Jun 24 2008 - 08:47:24 CDT)
- AMBER: qmmm_DFTB problem Dr. Xiaofeng (Frank) Duan (Tue Jun 24 2008 - 08:58:46 CDT)
- Re: AMBER: problems form the pdb to the mol2 Cyril Bauvais (Tue Jun 24 2008 - 09:05:36 CDT)
- Re: AMBER: qmmm_DFTB problem Gustavo Seabra (Tue Jun 24 2008 - 09:31:15 CDT)
- AMBER: Compilation of amber8 patched with ramd Francesco Pietra (Tue Jun 24 2008 - 09:32:54 CDT)
- Re: AMBER: improving GAFF sulfonamide parameters Junmei Wang (Tue Jun 24 2008 - 09:34:28 CDT)
- AMBER: dihedral potential with odd periodicity Germain Vallverdu (Tue Jun 24 2008 - 09:43:26 CDT)
- Re: AMBER: Installation Problem of AMBER10 Atro Tossavainen (Tue Jun 24 2008 - 09:37:57 CDT)
- Re: AMBER: Installation Problem of AMBER10 David A. Case (Tue Jun 24 2008 - 09:49:26 CDT)
- Re: AMBER: Compilation of amber8 patched with ramd David A. Case (Tue Jun 24 2008 - 09:55:10 CDT)
- Re: AMBER: Compilation of amber8 patched with ramd Vlad Cojocaru (Tue Jun 24 2008 - 10:07:03 CDT)
- Re: AMBER: [Fwd: failure to load box parameters] David A. Case (Tue Jun 24 2008 - 10:14:51 CDT)
- AMBER: Using AMBER forces Steven Winfield (Tue Jun 24 2008 - 10:44:41 CDT)
- AMBER: rdparm Segmentation fault on Ubuntu Alan (Tue Jun 24 2008 - 10:50:12 CDT)
- AMBER: Further request answers from Dr. Junmei Wang Rilei Yu (Tue Jun 24 2008 - 10:59:05 CDT)
- £º Re: AMBER: problems form the pdb to the mol2 Rilei Yu (Tue Jun 24 2008 - 11:14:15 CDT)
- RE: AMBER: Using AMBER forces Ross Walker (Tue Jun 24 2008 - 11:22:25 CDT)
- Re: AMBER: Compilation of amber8 patched with ramd Francesco Pietra (Tue Jun 24 2008 - 11:28:18 CDT)
- Re: AMBER: Using AMBER forces Steven Winfield (Tue Jun 24 2008 - 11:54:49 CDT)
- Re: AMBER: Further request answers from Dr. Junmei Wang Junmei Wang (Tue Jun 24 2008 - 11:58:49 CDT)
- RE: AMBER: Using AMBER forces Ross Walker (Tue Jun 24 2008 - 13:19:13 CDT)
- Re: AMBER: drawing repeated units Taufik Al-Sarraj (Tue Jun 24 2008 - 17:15:39 CDT)
- RE: AMBER: drawing repeated units Ross Walker (Tue Jun 24 2008 - 16:40:26 CDT)
- Re: AMBER: Compilation of amber8 patched with ramd Francesco Pietra (Tue Jun 24 2008 - 16:52:09 CDT)
- Re: AMBER: Compilation of amber8 patched with ramd David A. Case (Tue Jun 24 2008 - 17:06:15 CDT)
- AMBER: how to derive torsional angle parameters in gaff Junmei Wang (Tue Jun 24 2008 - 20:45:42 CDT)
- Re: AMBER: Compilation of amber8 patched with ramd Francesco Pietra (Wed Jun 25 2008 - 03:17:59 CDT)
- AMBER: Debugf AMBER9 John Palmeri (Wed Jun 25 2008 - 02:38:53 CDT)
- Re: AMBER: Compilation of amber8 patched with ramd Vlad Cojocaru (Wed Jun 25 2008 - 04:00:10 CDT)
- AMBER: local coordinate system question caoch (Wed Jun 25 2008 - 04:33:15 CDT)
- AMBER: TI calculations in Amber10 Samuel Genheden (a03samge) (Wed Jun 25 2008 - 06:58:28 CDT)
- AMBER: Re: £º Re: AMBER: problems form the pdb to the mol2 Cyril Bauvais (Wed Jun 25 2008 - 08:00:54 CDT)
- Re: AMBER: local coordinate system question David A. Case (Wed Jun 25 2008 - 09:32:16 CDT)
- AMBER: A problem of dihedral angle Harry (Yicun) Ni (Wed Jun 25 2008 - 10:31:24 CDT)
- RE: AMBER: A problem of dihedral angle Ross Walker (Wed Jun 25 2008 - 10:48:56 CDT)
- Re: AMBER: A problem of dihedral angle Carlos Simmerling (Wed Jun 25 2008 - 10:53:16 CDT)
- Re: AMBER: TI calculations in Amber10 Thomas Steinbrecher (Wed Jun 25 2008 - 11:15:47 CDT)
- AMBER: Re: AMBER: Re: £º Re: AMBER: problems form the pdb to the mol2 Junmei Wang (Wed Jun 25 2008 - 11:29:44 CDT)
- AMBER: amber10 compile gfortran question James W. Caldwell (Wed Jun 25 2008 - 13:10:58 CDT)
- Re: AMBER: [Fwd: failure to load box parameters] Daniel Smith (Wed Jun 25 2008 - 13:30:18 CDT)
- Re: AMBER: amber10 compile gfortran question David A. Case (Wed Jun 25 2008 - 14:03:54 CDT)
- Re: AMBER: [Fwd: failure to load box parameters] David A. Case (Wed Jun 25 2008 - 14:09:28 CDT)
- RE: AMBER: amber10 compile gfortran question James W. Caldwell (Wed Jun 25 2008 - 14:11:58 CDT)
- AMBER: sleap - TER-card In Hee Park (Wed Jun 25 2008 - 14:14:39 CDT)
- Re: AMBER: A problem of dihedral angle Harry (Yicun) Ni (Wed Jun 25 2008 - 14:42:09 CDT)
- AMBER: rdparm Segmentation fault Alan (Wed Jun 25 2008 - 16:24:34 CDT)
- Re: AMBER: sleap - TER-card David A. Case (Wed Jun 25 2008 - 17:05:59 CDT)
- AMBER: Antechamber/mopac am1-bcc charge Dong Xu (Wed Jun 25 2008 - 17:09:39 CDT)
- Re: AMBER: Antechamber/mopac am1-bcc charge Junmei Wang (Wed Jun 25 2008 - 17:44:07 CDT)
- Re: AMBER: rdparm Segmentation fault David A. Case (Wed Jun 25 2008 - 19:07:20 CDT)
- AMBER: unsubscribe amber Rabin (Wed Jun 25 2008 - 19:48:51 CDT)
- AMBER: (no subject) Daniel B. Kaplan (Wed Jun 25 2008 - 21:23:43 CDT)
- Re: AMBER: Antechamber/mopac am1-bcc charge Dong Xu (Thu Jun 26 2008 - 01:21:03 CDT)
- Re: AMBER: how to derive torsional angle parameters in gaff Balazs JOJART (Thu Jun 26 2008 - 03:53:40 CDT)
- AMBER: Amber:unsubscribe amber sanket.deshmukh_at_ucd.ie (Thu Jun 26 2008 - 06:53:22 CDT)
- Re: AMBER: Antechamber/mopac am1-bcc charge Junmei Wang (Thu Jun 26 2008 - 09:33:44 CDT)
- AMBER: concerning force fields Adrien Delmont (Thu Jun 26 2008 - 10:14:15 CDT)
- AMBER: Peseckis, Steven M. (Thu Jun 26 2008 - 10:54:05 CDT)
- Re: AMBER: concerning force fields Carlos Simmerling (Thu Jun 26 2008 - 11:16:48 CDT)
- Re: AMBER: Antechamber/mopac am1-bcc charge Francesco Pietra (Thu Jun 26 2008 - 12:29:12 CDT)
- AMBER: ligand partial charge and conformation question Dong Xu (Thu Jun 26 2008 - 13:01:31 CDT)
- Re: AMBER: concerning force fields Adrien Delmont (Thu Jun 26 2008 - 13:29:39 CDT)
- Re: AMBER: Antechamber/mopac am1-bcc charge Junmei Wang (Thu Jun 26 2008 - 13:27:10 CDT)
- AMBER: output file AMBER9_MPI Vijay Manickam Achari (Thu Jun 26 2008 - 14:06:19 CDT)
- Re: AMBER: concerning force fields Carlos Simmerling (Thu Jun 26 2008 - 14:25:04 CDT)
- Re: AMBER: Antechamber/mopac am1-bcc charge FyD (Thu Jun 26 2008 - 15:53:20 CDT)
- Re: AMBER: improving GAFF sulfonamide parameters David Mobley (Thu Jun 26 2008 - 15:50:03 CDT)
- AMBER: Dihedral Angle Parameters Ilyas Yildirim (Thu Jun 26 2008 - 16:07:16 CDT)
- Re: AMBER: Dihedral Angle Parameters Ilyas Yildirim (Thu Jun 26 2008 - 17:07:55 CDT)
- RE: AMBER: Dihedral Angle Parameters Ross Walker (Thu Jun 26 2008 - 17:18:52 CDT)
- Re: AMBER: Dihedral Angle Parameters Carlos Simmerling (Thu Jun 26 2008 - 17:20:41 CDT)
- Re: AMBER: Antechamber/mopac am1-bcc charge Junmei Wang (Thu Jun 26 2008 - 17:25:32 CDT)
- Re: AMBER: sleap - TER-card In Hee Park (Thu Jun 26 2008 - 19:31:40 CDT)
- Re: AMBER: sleap - TER-card David A. Case (Thu Jun 26 2008 - 20:19:01 CDT)
- Re: AMBER: Dihedral Angle Parameters Carlos Simmerling (Thu Jun 26 2008 - 16:30:53 CDT)
- AMBER: REMD Amber10 : error in reading namelist cntrl rebeca (Fri Jun 27 2008 - 04:01:26 CDT)
- Re: AMBER: Antechamber/mopac am1-bcc charge FyD (Fri Jun 27 2008 - 04:07:45 CDT)
- Re: AMBER: concerning force fields Adrien Delmont (Fri Jun 27 2008 - 07:22:08 CDT)
- Re: AMBER: concerning force fields Carlos Simmerling (Fri Jun 27 2008 - 07:34:21 CDT)
- AMBER: Group specification problem fatima.chami_at_durham.ac.uk (Fri Jun 27 2008 - 07:59:09 CDT)
- Re: AMBER: concerning force fields Karl Kirschner (kkirschn) (Fri Jun 27 2008 - 08:02:03 CDT)
- Re: AMBER: REMD Amber10 : error in reading namelist cntrl Carlos Simmerling (Fri Jun 27 2008 - 09:47:42 CDT)
- Re: AMBER: Antechamber/mopac am1-bcc charge Junmei Wang (Fri Jun 27 2008 - 10:35:23 CDT)
- AMBER: pmemd 10 output Vlad Cojocaru (Fri Jun 27 2008 - 10:48:35 CDT)
- RE: AMBER: pmemd 10 output Ross Walker (Fri Jun 27 2008 - 11:16:44 CDT)
- Re: AMBER: pmemd 10 output Vlad Cojocaru (Fri Jun 27 2008 - 11:24:58 CDT)
- Re: AMBER: pmemd 10 output Vlad Cojocaru (Fri Jun 27 2008 - 11:34:37 CDT)
- AMBER: Test scripts James W. Caldwell (Fri Jun 27 2008 - 11:35:26 CDT)
- RE: AMBER: pmemd 10 output Ross Walker (Fri Jun 27 2008 - 11:40:48 CDT)
- Re: AMBER: Test scripts David A. Case (Fri Jun 27 2008 - 11:44:25 CDT)
- AMBER: ptraj - read in part of trajectory Seth Lilavivat (Fri Jun 27 2008 - 11:41:51 CDT)
- RE: AMBER: Test scripts James W. Caldwell (Fri Jun 27 2008 - 11:54:56 CDT)
- Re: AMBER: ptraj - read in part of trajectory Vlad Cojocaru (Fri Jun 27 2008 - 11:59:14 CDT)
- Re: AMBER: ptraj - read in part of trajectory Carlos Simmerling (Fri Jun 27 2008 - 12:00:32 CDT)
- Re: AMBER: ptraj - read in part of trajectory Seth Lilavivat (Fri Jun 27 2008 - 12:01:03 CDT)
- Re: AMBER: David A. Case (Fri Jun 27 2008 - 13:55:04 CDT)
- AMBER: question about the charge Harry (Yicun) Ni (Fri Jun 27 2008 - 15:37:55 CDT)
- Re: AMBER: question about the charge Carlos Simmerling (Fri Jun 27 2008 - 15:52:22 CDT)
- Re: AMBER: Antechamber/mopac am1-bcc charge Francesco Pietra (Fri Jun 27 2008 - 17:02:21 CDT)
- Re: AMBER: question about the charge Harry (Yicun) Ni (Fri Jun 27 2008 - 18:57:37 CDT)
- Re: AMBER: Antechamber/mopac am1-bcc charge FyD (Sat Jun 28 2008 - 02:47:54 CDT)
- Re: AMBER: concerning force fields Adrien Delmont (Sat Jun 28 2008 - 11:10:05 CDT)
- Re: AMBER: How to extract solvent box information from .rst or .mdcrd files? David A. Case (Sat Jun 28 2008 - 11:37:45 CDT)
- Re: AMBER: Antechamber/mopac am1-bcc charge Francesco Pietra (Sat Jun 28 2008 - 12:22:44 CDT)
- AMBER: Seed for random number generator Francesco Pietra (Sun Jun 29 2008 - 03:22:12 CDT)
- Re: AMBER: Antechamber/mopac am1-bcc charge FyD (Sun Jun 29 2008 - 08:18:15 CDT)
- AMBER: RE: AMBER 10 failure to run in UBUNTU Peseckis, Steven M. (Sun Jun 29 2008 - 19:13:38 CDT)
- AMBER: Constrained group fatima.chami_at_durham.ac.uk (Mon Jun 30 2008 - 04:54:02 CDT)
- AMBER: NMR refinement teresa.ierano_at_unina.it (Mon Jun 30 2008 - 05:37:48 CDT)
- AMBER: nmode analysis Joachim Reichelt (Mon Jun 30 2008 - 06:53:21 CDT)
- Re: AMBER: nmode analysis Mark Williamson (Mon Jun 30 2008 - 07:12:09 CDT)
- Re: AMBER: nmode analysis Joachim Reichelt (Mon Jun 30 2008 - 07:36:32 CDT)
- RE: AMBER: nmode analysis Vahdati N. (Mon Jun 30 2008 - 07:41:40 CDT)
- AMBER: hold atoms fixed Boutheina Kerkeni (Mon Jun 30 2008 - 07:51:17 CDT)
- Re: AMBER: hold atoms fixed Carlos Simmerling (Mon Jun 30 2008 - 08:02:19 CDT)
- Re: AMBER: hold atoms fixed Boutheina Kerkeni (Mon Jun 30 2008 - 08:12:33 CDT)
- Re: AMBER: hold atoms fixed fatima.chami_at_durham.ac.uk (Mon Jun 30 2008 - 08:16:09 CDT)
- Re: AMBER: hold atoms fixed Boutheina Kerkeni (Mon Jun 30 2008 - 08:12:33 CDT)
- Re: AMBER: hold atoms fixed Gustavo Seabra (Mon Jun 30 2008 - 09:10:53 CDT)
- AMBER: wrapping a restart file fatima.chami_at_durham.ac.uk (Mon Jun 30 2008 - 09:40:58 CDT)
- Re: AMBER: NMR refinement David A. Case (Mon Jun 30 2008 - 09:44:51 CDT)
- Re: AMBER: wrapping a restart file Gustavo Seabra (Mon Jun 30 2008 - 10:31:53 CDT)
- Re: AMBER: Constrained group Robert Duke (Mon Jun 30 2008 - 11:03:15 CDT)
- AMBER: (no subject) fatima.chami_at_durham.ac.uk (Mon Jun 30 2008 - 11:26:23 CDT)
- Re: AMBER: wrapping a restart file Robert Duke (Mon Jun 30 2008 - 11:34:54 CDT)
- AMBER: watershell cero? rebeca (Mon Jun 30 2008 - 11:22:11 CDT)
- Re: AMBER: (no subject) Robert Duke (Mon Jun 30 2008 - 11:43:11 CDT)
- AMBER: MM-PBSA calculation problem Wei Huang (Mon Jun 30 2008 - 11:41:16 CDT)
- AMBER: error in reading namelist cntrl Maria Frushicheva (Mon Jun 30 2008 - 15:02:50 CDT)
- Re: AMBER: error in reading namelist cntrl David A. Case (Mon Jun 30 2008 - 15:28:36 CDT)
- RE: AMBER: error in reading namelist cntrl Ross Walker (Mon Jun 30 2008 - 15:26:38 CDT)
- AMBER: Regarding force field ff02 and ion library Abhishek Singh (Mon Jun 30 2008 - 15:54:52 CDT)
- AMBER: missing torsion parameters John Bennett (Mon Jun 30 2008 - 16:06:07 CDT)
- Re: AMBER: Regarding force field ff02 and ion library David A. Case (Mon Jun 30 2008 - 16:14:37 CDT)
- Re: AMBER: Regarding force field ff02 and ion library Thomas Cheatham III (Mon Jun 30 2008 - 16:30:05 CDT)
- RE: AMBER: missing torsion parameters Ross Walker (Mon Jun 30 2008 - 17:46:45 CDT)
Last message date: Wed Dec 31 2008 - 22:47:27 CST
Archived on: Thu Jan 08 2009 - 16:01:47 CST
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