AMBER Archive (2008)

Subject: AMBER: RMSD of two different molecules

From: JunJun Liu (ljjlp03_at_gmail.com)
Date: Wed Mar 26 2008 - 15:35:32 CDT

Hello everyone,

I have two small molecules with different atom numbers. Is there a way to
know the RMSD value between these two different molecules? Can ptraj do
this?

Thanks in advance!

Junjun
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