AMBER Archive (2006)

Subject: Re: AMBER: Error message in methane solvent system

From: David A. Case (case_at_scripps.edu)
Date: Fri Dec 08 2006 - 10:41:49 CST

On Fri, Dec 08, 2006, Atsutoshi Okabe wrote:

>
> SANDER BOMB in subroutine nonbond_list
> volume of ucell too big, too many subcells
> list grid memory needs to be reallocated, restart sander

The simplest thing to do (probably) is use pmemd instead of sander, if that
works for you.

Otherwise, run a short simulation (before the error), then restart sander, as
the error message suggests.

....dac

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