AMBER Archive (2006)

Subject: Re: AMBER: Phosphorylated protein MD simulation

From: Myunggi Yi (myunggi_at_gmail.com)
Date: Thu Oct 26 2006 - 10:18:26 CDT

Sorry.

Amber8 manual Page 254-263.

On 10/26/06, Myunggi Yi <myunggi_at_gmail.com> wrote:
> I'm not an expert in this area.
> Since nobody answers, I want to give some idea.
>
> See: http://www.rosswalker.co.uk/tutorials/amber_workshop/Tutorial_four/
>
> and Amber8 tutorial Page 254-263.
>
>
>
> On 10/25/06, Fenghui Fan <fenghui_fan_at_yahoo.com> wrote:
> > Dear all,
> >
> > I want to do MD simulation of a phosphorylated
> > protein. Will you please tell me from the
> > unphosphorylated protein, how can we get the
> > coordinate file of the phosphorylated protein? And
> > then how can we get the parmtop and inpcrd files?
> >
> > Best regards.
> >
> > Fenghui Fan
> >
> >
> >
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>
>
> --
> Best wishes,
>
> MYUNGGI YI
> ==================================
> KLB 419
> Institute of Molecular Biophysics
> Florida State University
> Tallahassee, FL 32306
>
> Office: (850) 645-1334
> http://www.scs.fsu.edu/~myunggi
> 

-- 
Best wishes,

MYUNGGI YI
==================================
KLB 419
Institute of Molecular Biophysics
Florida State University
Tallahassee, FL 32306

Office: (850) 645-1334
http://www.scs.fsu.edu/~myunggi
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