AMBER Archive (2006)

Subject: AMBER: Phenyl Ring atom types

From: sethl_at_gatech.edu
Date: Thu Oct 12 2006 - 13:59:24 CDT


Dear Amber Community,

I am still having trouble trying to get the phenyl ring on an Ethidium molecule
to behave correctly as it wants to go coplaner with the rest of the molecule.
As a matter of fact I am actually unsure about all of the correct atom types I
should be assigning to this molecule. Currently I have all of the carbons as
type CA. Help on this matter is greatly appreciated.

Thanks always,
Seth
Georgia Institute of Technology
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