AMBER Archive (2006)

Subject: Re: AMBER: hbond analysis

From: Sergey Samsonov (sergeys_at_biotec.tu-dresden.de)
Date: Thu Oct 05 2006 - 01:40:59 CDT

Thank you very much for the answer, I couldn't find the answer either in
Manual, nor in List Archive.

Sergey

Thomas Cheatham wrote:
>> since you are presently studying h-bonds maybe you could answer this question
>> of mine. Do you know what is the meaning of the lifetime parameter, the number
>> after (in parenthesis) and of the maxocc parameter, what are the units used
>> for these three (or two since the first two have the same units) parameters?
>>
>
> http://amber.ch.ic.ac.uk/archive/all/7158.html
>
> lifetime is, by default in units of the time between frames (1ps) and can
> be altered with the time keyword (to specify the time between frames).
> The ()'s hold the standard deviation.
>
> maxocc is the maximum number of frames, sequentially, that the hbond was
> formed. This is not a time unit.
>
>
>
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