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AMBER Archive (2006)Subject: Re: AMBER: Problem with ptraj
From: Thomas Cheatham (tec3_at_utah.edu)
> I am trying to use ptraj to analyse hydrogen bonds. but
To provide more input about your atom selections, set
prnlev 3
> acceptor T N3 H3
...before the donor/acceptor commands...
> PTRAJ:
I do not understand all that extra font information (probably from your
> I have checked that the input file DNA_melt.mdcrd is in the $AMBERHOME
The file should be in your current directory, not in $AMBERHOME, unless of
Good luck,
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