AMBER Archive (2006)

Subject: Re: AMBER: Installation amber 9 on IBM SP4

From: Myunggi Yi (myunggi_at_gmail.com)
Date: Thu Aug 24 2006 - 21:59:09 CDT


The compilation stopped.
The following is the end of the screen output.

=====================================
Target "all" is up to date.
        cd antechamber; make install
        xlc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2
-DCLINK_PLAIN -o antechamber.o antechamber.c
        xlc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2
antechamber.o -lm -o antechamber
        xlc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2
-DCLINK_PLAIN -o atomtype.o atomtype.c
        xlc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2
atomtype.o -lm -o atomtype
        xlC -c -DCLINK_PLAIN -o bondtype.o bondtype.C
        xlC bondtype.o -lm -o bondtype
        xlc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2
-DCLINK_PLAIN -o charmmgen.o charmmgen.c
        xlc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2
charmmgen.o -lm -o charmmgen
        xlc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2
-DCLINK_PLAIN -o crdgrow.o crdgrow.c
        xlc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2
crdgrow.o -lm -o crdgrow
        xlc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2
-DCLINK_PLAIN -o database.o database.c
        xlc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2
database.o -lm -o database
        xlc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2
-DCLINK_PLAIN -o espgen.o espgen.c
        xlc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 espgen.o
-o espgen xlc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2
-DCLINK_PLAIN -o parmcal.o parmcal.c
        xlc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2
parmcal.o -lm -o parmcal
        xlc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2
-DCLINK_PLAIN -o parmchk.o parmchk.c
        xlc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2
parmchk.o -lm -o parmchk
        xlc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2
-DCLINK_PLAIN -o prepgen.o prepgen.c
        xlc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2
prepgen.o -lm -o prepgen
        xlc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2
-DCLINK_PLAIN -o respgen.o respgen.c
        xlc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2
respgen.o -lm -o respgen
        xlc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2
-DCLINK_PLAIN -o top2mol2.o top2mol2.c
        xlc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2
top2mol2.o -lm -o top2mol2
        xlc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2
-DCLINK_PLAIN -o translate.o translate.c
        xlc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2
translate.o -lm -o translate
        mv am1bcc antechamber atomtype bondtype charmmgen crdgrow
 database espgen parmcal parmchk prepgen respgen top2mol2
translate ../../exe
        cp mopac.sh ../../exe
        cd build_amoeba; make install
        /lib/cpp -P -DMASSLIB -DNMLEQ -DCLINK_PLAIN -DXLF90 > amoeba_parm.f

What's going on?
I waited for tens of minuites, but nothing happened.

On 8/24/06, Myunggi Yi <myunggi_at_gmail.com> wrote:
> I defined the variable on top of the functions.
> It works.
>
>
> On 8/24/06, Myunggi Yi <myunggi_at_gmail.com> wrote:
> > Another error,
> >
> > this is caused by bugfix 12.
> >
> > cd antechamber; make install
> > xlc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2
> > -DCLINK_PLAIN -o am1bcc.o am1bcc.c
> > xlc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 am1bcc.o
> > -lm -o am1bcc
> > xlc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2
> > -DCLINK_PLAIN -o antechamber.o antechamber.c
> > "prep.c", line 65.25: 1506-275 (S) Unexpected text 'double' encountered.
> > make: 1254-004 The error code from the last command is 1.
> >
> >
> > Stop.
> > make: 1254-004 The error code from the last command is 2.
> >
> >
> > Stop.
> >
>
>
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