AMBER Archive (2006)

Subject: Re: AMBER: help with leap

From: Bill Ross (ross_at_cgl.ucsf.edu)
Date: Wed Aug 16 2006 - 19:51:56 CDT


> in xleap there appear to be many
> extra unconnected atoms.

Make your residue and atom names agree w/ amber conventions,
or add mappings. To just get bonds drawn to see things looking
normal, try bondbydistance.. but this is useless for further
work.

Bill
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