AMBER Archive (2006)

Subject: AMBER: any work-around for 80 character mask string limit?

From: Tanya Johannsen (tanyajohannsen_at_yahoo.com)
Date: Tue Aug 01 2006 - 15:12:22 CDT

Dear AMBER community:

I have a very long, complicated list of residues that
I would like to restrain using ntr=1 during
minimization. There is no way that I can define this
list of residues in 80 characters or less, as is
required for the restraintmask variable. Has anyone
else faced a similar problem, and found a work-around?
For example, could I define a long list of residues in
a separate file and then have the restraintmask
variable read in that file? I would be very grateful
for any suggestions.

Thank you in advance.

Tanya

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