AMBER Archive (2006)

Subject: Re: AMBER: GB tutorials and disulphide bonds

From: David A. Case (case_at_scripps.edu)
Date: Tue Aug 01 2006 - 12:14:20 CDT

On Mon, Jul 31, 2006, Abhilash wrote:

> I was following the GB tutorials from
> http://amber.scripps.edu/tutorial/gb/gb_tutorial.html and I had this
> problem when I ran the "bond command" on tleap:
>
> > bond trx.35.SG trx.32.SG
> bond: Argument #1 is type String must be of type: [atom]
> usage: bond <atom1> <atom2> [order]
>

Use the "desc" command to find out what LEaP thinks it has loaded in the unit
"trx". This will usually pinpoint the required syntax.

...good luck...dac

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