AMBER Archive (2006)

Subject: RE: AMBER: fixing residues

From: a a (patd_2_at_hotmail.com)
Date: Mon Jul 03 2006 - 21:47:08 CDT

Hi!

You may tried to follow the descriptions in Tutorial 2 Section 5.

aa

>From: "Prabhakar. G." <prabha.ganesan_at_gmail.com>
>Reply-To: amber_at_scripps.edu
>To: amber_at_scripps.edu
>Subject: AMBER: fixing residues
>Date: Mon, 3 Jul 2006 17:46:46 +0530
>
>Dear Amber community,
>
>we are trying to do a md simulation of a particular loop of a protein,
>The protein has a total of 398 residues and the loop regions include
>residues 228-241.
>is there any option in amber to fix or freeze the conformation of other
>residues except that of loop
>so that they do not move during the simulation.
>
>prabhakar
>National Inst of Virology
>Pune
>India

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