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AMBER Archive (2006)Subject: AMBER: Ptraj reimage truncated octahedral box simulation with AMBER8
From: Ricardo J. F. Branco (ricardo.branco_at_fc.up.pt)
Dear AMBER users,
I am using a truncated octehedral TIP3P type water box in my simulations using
center mass
I got a new trajectory with a distorted cubic shape in which the solute is
What should I do to overcome this problem?
Thanks in advance,
RB
-- ************************************* Ricardo J. F. Branco, Ph.D. Student Theoretical and Computational Chemistry Group REQUIMTE - Faculty of Science University of Oporto Rua do Campo Alegre, 687 P 4169-007 Porto, Portugal e-mail: ricardo.branco_at_fc.up.pt Phone: (+351) 226 082 826 Fax: (+351) 226 082 959 *************************************
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