AMBER Archive (2006)

Subject: AMBER: Amber: Segfault while running sander

From: sethl_at_gatech.edu
Date: Mon Jun 05 2006 - 13:19:33 CDT 

--
Dear All,

When running sander in as outlined in the DNA tutorial, I experience a
segmentation fault.  I could not find a solution in the archives and welcomeany
suggestions.  My commands are as follows:

sander -O - i -polyAT_vac_init_min.in -o polyAT_vac_init_min.out -c
polyAT_vac.inpcrd -p polyAT_vac.prmtop -r polyAT_vac_init_min.rst

I created the polyAT_vac_init_min.in input file according to the tutorial which
looks like this:

polyA-polyT 10-mer: initial minimisation prior to MD
 &cntrl
   imin   = 1,
   maxcyc = 500,
   ncyc   = 250,
   ntb    = 0,
   igb    = 0,
   cut    = 12
 /

Thank you for your time and help.

Seth Lilavivat
Georgia Insititute of Technology
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