AMBER Archive (2006)

Subject: AMBER: internal coordinates

From: Ioana Cozmuta (icozmuta_at_mail.arc.nasa.gov)
Date: Wed Apr 26 2006 - 16:56:20 CDT

Hi Amber users,

Does anybody happen to know what each of the columns in the
$AMBERHOME/dat/leap/parm/nucgen.dat
represent and how were they calculated? I could not find this
information in the Amber or nucgen manuals.

$ABDNA !ARNOTT BDNA MONOMER UNIT
H 8.91 95.2 2.08
H 8.91 95.2 2.08
P 8.91 95.2 2.08
OA 10.20 91.1 1.86
OB 8.82 103.3 1.29
O3' 8.75 61.4 0.25

etc....
Thanks,
Ioana 

-- 
Ioana Cozmuta, Ph.D
Eloret Corporation
NASA Ames Research Center
Mail Stop 230-3
Moffett Field, CA  94035
phone (650) 604-0993
e-mail: icozmuta_at_mail.arc.nasa.gov
http://people.nas.nasa.gov/~ioana/

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