AMBER Archive (2006)

Subject: AMBER: VdW radii in the topology file

From: Vlad Cojocaru (Vlad.Cojocaru_at_eml-r.villa-bosch.de)
Date: Mon Apr 10 2006 - 11:14:16 CDT

Dear Amber users,

in ptraj "trajout [file] PDB dumpq"... dumps the VdW radii in the pdb
file. Could somebody tell me shortly, where actually in the topology
file are the vdw radii stored (I looked at the file formats on the Amber
webpage and searched the archive but I couldnt really find the info)?

Thanks

 Best
vlad 

-- 
Dr. Vlad Cojocaru
EML Research gGmbH
Molecular and Cellular Modeling Group
Schloss-Wolfsbrunnenweg 33
69118 Heidelberg, Germany
Phone: +49-6221-533266
Fax: +49-6221-533298
e-mail: Vlad.Cojocaru_at_eml-r.villa-bosch.de
http://projects.villa-bosch.de/mcm/people/cojocaru/

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