AMBER Archive (2006)

Subject: Re: AMBER: Different result for serial and parallel sander with IREST=1 (AMBER 8) !

From: David A. Case (case_at_scripps.edu)
Date: Mon Apr 03 2006 - 09:57:36 CDT


On Mon, Apr 03, 2006, Pradipta Bandyopadhyay wrote:
>
> I compiled AMBER 8 in both in serial and parallel mode.
>
> When I tested the serial and parallel for a longer job with the following
> input file:
> upto 400 steps the results are identical (i.e. if we consider 4 digits
> after decimal - as sander prints). However, after that the two simulations
> start to diverge slowly.

This is expected; please see pp. 9-10 of the Amber 8 Users' Manual.

....dac

-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber_at_scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo_at_scripps.edu