AMBER Archive (2006)

Subject: RE: AMBER: amber8 error installation

From: Ross Walker (ross_at_rosswalker.co.uk)
Date: Tue Mar 28 2006 - 10:37:34 CST

Dear Abd,

Yacc is required for building leap. If you don't want to run Leap on your
cluster, not recommended anyway as you should build the inpcrd and prmtop on
a local machine and copy them to the cluster to run MD, then you can ignore
the error message. Since Leap is the last thing to be built (for this very
reason) everything else should be built fine. You can simply go ahead and cd
$AMBERHOME/test and runs the tests, just beware that the testing will fail
once it gets to the leap section (again the last section).

Alternatively you could ask your sysadmin to install the required packages
that Mark mentioned below.

All the best
Ross

> -----Original Message-----
> From: owner-amber_at_scripps.edu
> [mailto:owner-amber_at_scripps.edu] On Behalf Of Abd Ghani Abd Aziz
> Sent: Tuesday, March 28, 2006 07:45
> To: amber_at_scripps.edu
> Subject: Re: AMBER: amber8 error installation
>
> Dear Mark Williamson,
>
> actually i'm using somebody else cluster which is
> using Rock Clusters... so.. before trying install for
> parrallel i want to make sure serial is working
> first.. but then i found that error..
>
> so .. do i need to install byacc rpm and XFree86-devel
> rpm ???
>
> thanks Mark for your email.. hope to here from you
> again :p
>
>
> --- Mark Williamson <Mark.Williamson_at_imperial.ac.uk>
> wrote:
>
> > Abd Ghani Abd Aziz wrote:
> > > dear amber users,
> > >
> > > i try to install amber 8 for serial to my pc with
> > dual
> > > xeon processor but i got this error:
> > >
> > > yacc parser.y
> > > make[2]: yacc: Command not found
> > > make[2]: *** [parser.c] Error 127
> > > make[2]: Leaving directory
> > > `/usr/local/amber8/src/leap/src/leap'
> > > make[1]: *** [install] Error 2
> > > make[1]: Leaving directory
> > > `/usr/local/amber8/src/leap'
> > > make: *** [serial] Error 2
> >
> > What distro of linux are you running?
> >
> > If it is redhat(ish); try installing the byacc rpm.
> > You will also need
> > the XFree86-devel rpm to be installed for later in
> > the build.
> >
> > regards,
> >
> > Mark
> >
> > http://dumb.ch.ic.ac.uk/~mjw99/
> >
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/\
\/
|\oss Walker

| HPC Consultant and Staff Scientist |
| San Diego Supercomputer Center |
| Tel: +1 858 822 0854 | EMail:- ross_at_rosswalker.co.uk |
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