AMBER Archive (2006)

Subject: AMBER: helix content during my simulation

From: julien (julien.pecher_at_u-picardie.fr)
Date: Mon Feb 06 2006 - 07:09:38 CST

Dear all,

I want to "observe" the alpha helix content in my peptide during the
simulation.
Differents persons use the dssp program. How using the dssp program with amber ?
is-it with MMTSB or with ptraj or carnal?

Sincerely yours

best regards
julien 

-- 
Julien Pecher
Laboratoire de Biophysique, DMAG, INERIS-EA 3901
Faculte de Pharmacie, 1 rue des Louvels
80037 Amiens Cedex 1, France

Tel: +33 (0)3 2282-7786  Fax: +33 (0)3 2282-7469
     +33 (0)3 2282-7498
email: julien.pecher_at_u-picardie.fr
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