AMBER Archive (2005)

Subject: Re: AMBER: problem with ssh and xleap

From: Scott Brozell (sbrozell_at_scripps.edu)
Date: Wed Dec 28 2005 - 16:02:48 CST


Hi D, A

The seg fault may be unrelated to the warnings.
Try these to examine phase space:
Run tleap.
Give details for the platform actually running leap.
Goooogggle.
Get a stack trace via
gdb `which teLeap` core.{pid}
where

Scott

On Tue, 27 Dec 2005, A D wrote:

> Hi, I'm attempting to work on the
>
> http://www.rosswalker.co.uk/tutorials/amber_workshop/Tutorial_one/section2.htm
>
> tutorial remotely through ssh on my win 2000 machine. I'm at the part that
> requires starting up xleap. I'm using the Xwinlogon win 32 x-server for my
> sessions but it seems to be having trouble with the display. When I type in
>
>
> $AMBERHOME/exe/xleap -s -f $AMBERHOME/dat/leap/cmd/leaprc.ff99
>
> It spits back
> WARNING:Color name "Tan" not defined
> WARNING: Cannot convert string to type..etc etc... FontStruct
> Segmentation fault
> etc etc
>
> (the full message is rather large but consists
> mainly of the above type of lines. I couldn't copy it all because the
> clipboard functionality failed to start up)
>
> and boots me back to the prompt. Is there some additional tweaking I can do?
>
> Thanks.
>

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