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AMBER Archive (2005)Subject: AMBER: Ligand problem
From: bybaker_at_itsa.ucsf.edu
('binary' encoding is not supported, stored as-is)
Hello, Amber:
I try to creat the .parmtop and inpcrd files for my protein model. The
guanine.4% antechamber -i chol2.pdb -fi pdb -o chol2.prep -fo prepi
guanine.5% parmchk -i chol2.prep -f prepi -o chol2.parm
Then I load all the files:
guanine.6% $AMBERHOME/exe/tleap
Here is the problem:
> test = loadpdb n62ch1.pdb
ATOM NAMES IN EACH RESIDUE MUST BE UNIQUE:
Bond: maximum coordination exceeded on .R<UNK 1>.A<C 71>
Can any one give me some advices on how to fix the problem? I have
Your help will be very appreciated!
Bo
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