AMBER Archive (2005)

Subject: AMBER: input for mm_pbsa

From: Xioling Chuang (xioling_c_at_hotmail.com)
Date: Sun Nov 27 2005 - 00:31:09 CST


Dear All,

I am a new user in MM_PBSA. I would like to calculate the free energy
difference between two DNA strands using PBSA (proc = 2). I really have no
idea about setting some parameters, e.g. RADIOPT. Could anyone give me an
example input file for mm_pbsa.pl? The corresponding example files are also
welcome.
Thank you very much in advance.

Regards,
xioling

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