AMBER Archive (2005)Subject: AMBER: Quantifying DNA perterbation
From: Kara Di Giorgio (kdigiorgio_at_sbcglobal.net)
Date: Tue Nov 15 2005 - 19:44:03 CST
Does anyone know of a method to quantify how much DNA has been
perterbed during a MD run? I have done MD simulations of DNA with a
cross-linker of various lengths in it. I need to compare how much each
linker perterbed the DNA. Does anyone have any ideas?
Thank you,
Kara Di Giorgio
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber_at_scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo_at_scripps.edu
|