AMBER Archive (2005)

Subject: RE: AMBER: Could not open file (Melb.mdcrd) with mode (r)

From: Varsha Goyal (vgusp_at_yahoo.ca)
Date: Tue Sep 20 2005 - 16:25:45 CDT


Dear Ross,
1) I can't open mdcrd since size is too big (but i can
see all frames using VMD) and the permission looks
like this:
-rw-r--r-- 1 gupta users 25027560081 Aug 17 17:51
Melb.mdcrd
(may be size is really big)
2) my trajin file looks like this
trajin Melb.mdcrd 19966 19966
trajout lowest_energy_struct.pdb pdb
3) And i already took care of case.
>
> A few questions...
>
> 1) Can you open Melb.mdcrd in the current working
> directory in something
> else? Like vi or emacs? Do you have permission to
> read the file?
>
> 2) Can you post your extract_frame.trajin file so I
> can check it?
>
> 3) Have you got the case correct? Most (all?) Unix
> machines are case
> sensitive while Windows machines are not. Thus on a
> Unix machine Melb.mdcrd
> and melb.mdcrd are different files while on a
> windows machine they will be
> treated as the same file. You should check this.
>
> All the best
> Ross
>
> /\
> \/
> |\oss Walker
>
> | Department of Molecular Biology TPC15 |
> | The Scripps Research Institute |
> | Tel: +1 858 784 8889 | EMail:-
> ross_at_rosswalker.co.uk |
> | http://www.rosswalker.co.uk | PGP Key available on
> request |

__________________________________________________
Do You Yahoo!?
Tired of spam? Yahoo! Mail has the best spam protection around
http://mail.yahoo.com
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber_at_scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo_at_scripps.edu