AMBER Archive (2005)

Subject: AMBER: nmode minimization and normal mode calculation

From: Bing Xiong (bing.xiong_at_mail.mcgill.ca)
Date: Tue Aug 30 2005 - 08:53:11 CDT


Dear all,

I first use the nmode minimize my protein to the drms < 1*10**(-3),
then this saved coordinates were used as input for normal mode
calculation. But nmode complain the drms > 1*10**(-3). So I am
wondering is there a way let nmode first minimize several steps then
change to do the normal mode calculation. Or anyone has the
experience to deal with this situation? Thanks so much for your help!!

Bing
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