AMBER Archive (2005)

Subject: Re: AMBER: nucgen error (U not generated)

From: Thomas E. Cheatham, III (cheatham_at_chpc.utah.edu)
Date: Wed Jul 27 2005 - 22:49:33 CDT


> I have used nucgen to create an ARNA. My input file is
>
> -------------------------------------------------------
> NUC 1
> D
> G5 C C A C C C U G3
>
>
>
> NUC 2
> D
> C5 A G G G U G G C3
>

According to the manual, the "D" should be "R" in each strand as you are
creating RNA.

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