AMBER Archive (2005)

Subject: Re: AMBER: Leap question

From: David A. Case (case_at_scripps.edu)
Date: Thu Jul 14 2005 - 10:39:59 CDT


On Thu, Jul 14, 2005, Kara Di Giorgio wrote:

> xLeap keeps crashing when I try and load the pdb after I've
> loaded the organic prepin file.

We are going to need more information than this to have any hope of tracking
down the cause of the problem. The "plastocyanin" tutorial:

  http://www.rosswalker.co.uk/tutorials/amber_workshop/Tutorial_four/index.htm

gives an example of doing something that sounds very close to what you
propose: it adds copper to an otherwise "organic" system. Maybe that will
help.

...dac

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