AMBER Archive (2005)

Subject: AMBER: calculating hydrogen bonds

From: Vijay Manickam Achari (vjrajamany_at_yahoo.com)
Date: Tue Jun 28 2005 - 21:50:36 CDT


Dear amber users,

I have used ptraj to calculate hydrogen bond between
residues of my micelle structure.
I have got the output file. How do I do the
calculattion to get the hydrogen bond between defined
atoms in my residues?
For view I attached the output file.

Can any one show and help me how to calculate that
value?

Thanks.

Vijay

                
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