AMBER Archive (2005)

Subject: Re: AMBER: how to pull out frames

From: Vijay Manickam Achari (vjrajamany_at_yahoo.com)
Date: Mon Jun 13 2005 - 23:04:42 CDT


Thanks I try to do so..
Vijay
--- Husni Fattayer <fatayer78_at_yahoo.com> wrote:

> Hi Vijay,
>
> you can do that (delete certain frames) using VMD
> too,
> first u need to read the topology and coordinate
> files
> into vmd, and after that u can delete any frame u
> want. u should have the number of that frame handy.
>
> H. Fattayer
>
> --- Vijay Manickam Achari <vjrajamany_at_yahoo.com>
> wrote:
>
> > Dear amber users,
> >
> > I have simulated micelle structure in explicit
> water
> > for 5 nano second.
> >
> > When I observe in VMD I noticed one residue strip
> > out
> > from the structure and get back to the structure
> > again.
> >
> > Here I would like to erase the frame where the
> > residue
> > flip out from the structure. How and what I should
> > in
> > order to delete some of the unwanted frames?
> >
> > Thank you
> > Vijay

                
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