AMBER Archive (2005)

Subject: AMBER: Compile Problems of Parallel Amber8 on Mac G5

From: Suxin Zheng (sxzheng_at_u.washington.edu)
Date: Wed Jun 08 2005 - 18:02:23 CDT


> Dear amber,
> I have followed the introduction in the http://amber.scripps.edu/
> macos.html and complete the install of serial Amber8 on Mac G5. I
> have installed the lam-mpi and xlf and xlc. When I try to compile
> the parallel as:
> "
> cd src
> ./configure -lam xlf_macosx
> make parallel
> "
> It stopped when compile sander, and the last information is as
> below (the config.h and all the compile information as the attached
> files)
> "
> /usr/bin/ld: warning multiple definitions of symbol _second
> ../lib/sys.a(sys.o) definition of _second in section (__TEXT,__text)
> /System/Library/Frameworks/Accelerate.framework/Versions/A/
> Frameworks/vecLib.framework/Versions/A/libLAPACK.dylib(single
> module) definition of _second
> /usr/bin/ld: Undefined symbols:
> _mpi_allreduce
> _mpi_barrier_
> _mpi_bcast_
> _mpi_comm_free_
> _mpi_comm_rank_
> _mpi_comm_size_
> _mpi_comm_split_
> _mpi_init_
> _mpi_bcast
> _mpi_allreduce_
> _mpi_reduce_
> _mpi_sendrecv_
> _mpi_barrier
> _mpi_comm_rank
> _mpi_comm_size
> _mpi_isend
> _mpi_recv
> _mpi_wait
> _mpi_reduce
> _mpi_abort_
> _mpi_finalize_
> _mpi_send
> make: *** [sander] Error 1
> "
> How to deal with this problem?
> Thank you.
> Suxin Zheng


  • application/octet-stream attachment: config.h



>
>
>

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