AMBER Archive (2005)

Subject: Re: AMBER: nucgen problem

From: Bill Ross (ross_at_cgl.ucsf.edu)
Date: Tue Jun 07 2005 - 11:47:42 CDT


> overlapping of bases is seen at some base pairs

Normally this would be due to user miscalc of 5'-3' ordering
such that AG, GG, or AA base pairs result. As David says, we
need to see the input. Nukit is useful for generating that
input by the way.

Bill
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