AMBER Archive (2005)

Subject: AMBER: Protein ions?

From: Anthony Cruz (acb15885_at_uprm.edu)
Date: Thu Jun 02 2005 - 09:12:56 CDT


Hi users:
I try to make a simulation of a protein that have 2 calcium and 1 sodium. But
leap don't recognize this atoms. I search the parm99.dat and the sodium and
the calcium is included. How I could change my pdb for leap to recognize it?

Kind Regards
Anthony Cruz
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