AMBER Archive (2005)

Subject: Re: AMBER: ipol=1 & use_pme= ??

From: David A. Case (case_at_scripps.edu)
Date: Mon May 02 2005 - 11:44:47 CDT


On Sat, Apr 30, 2005, Cenk Andac wrote:
>
> I was wondering if I should turn off pme (use_pme=0)
> when ipol is set to 1.

No.

>
> when use_pme=0, do I still need to use a non-bonded
> cut-off distance (cut) for explicit solvent
> simulations?

Yes. The variable "cut" is needed for all simulations. The default is
generally good for PME simulations, but is too short for non-PME simulations.

...dac
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