AMBER Archive (2005)

Subject: AMBER: capping

From: amit_at_mbu.iisc.ernet.in
Date: Wed Apr 27 2005 - 02:30:37 CDT


Dear amber users,
 I am doing simulation of free amino acid as a ligand in protein. I would
like to cap the amino acid at N and C terminal. Even leap doesnt include
missing hydrogen atom at the N terminal.Give me some suggestion how to
perform capping in amber. I am a new amber user. Any suggestion is
appreciated.

Thanks.

amit

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